Commits for hiram

v449_preview to v449_preview2 (2023-05-22 to 2023-05-30) v449

57a2bac4726971e593dc92902803e55667782882 Mon May 22 13:34:49 2023 -0700

• adding Ensembl relations in chromAlias and new extended ensGene track to host Rapid Release ensGene refs #31332
  • src/hg/utils/automation/asmHubChromAlias.pl - lines changed 21, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 43, context: html, text, full: html, text

50f711447b7b3c2dfa65a490bd018e7b62e08b83 Fri May 26 13:47:26 2023 -0700

• a number of new RefSeq assemblies in invertebrates refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 88, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 116, context: html, text, full: html, text

d3f09e41b76b680a22b29d6a1d5b6c8547695096 Fri May 26 15:15:05 2023 -0700

• some invertebrates became obsolete refs #29545
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 12, context: html, text, full: html, text

3d33d00c61f8aa1e2dde2400388d78ebffaced0f Fri May 26 15:50:15 2023 -0700

• RefSeq catch up refs #29545
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text

5e98a4b579ae9b7efbcc20c0314b7b51e88b7caf Mon May 29 12:13:19 2023 -0700

• do not look for a database when it is an assembly hub (hs1) refs #31342
  • src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 2, context: html, text, full: html, text