Commits for max

v450_preview2 to v450_base (2023-06-20 to 2023-06-26) v450

1a51df9e3e5ada3fef5b68622e0fb4d2b9cbffe8 Thu Jun 22 02:09:59 2023 -0700

• fixing up revel.as file, email from Angie, found by buildTableDescriptions cron job
  • src/hg/makeDb/revel/revel.as - lines changed 5, context: html, text, full: html, text

78bd22b50e73eb5f60e403c47bf0c4bbc35c66bf Thu Jun 22 02:11:47 2023 -0700

• increasing distance of alt/fix patch note warning, refs #31121
  • src/hg/htdocs/style/HGStyle.css - lines changed 4, context: html, text, full: html, text

1e5471fab322302a10e19adf907ff26e020535f0 Thu Jun 22 12:55:37 2023 +0200

• adding -bed option to bigBedToBed, also removing the -maxItems option as it never worked, is not used anywhere at least in our code repo and also fixing the documentation page and a typo in the usage docs and the documentation page. refs #31531
  • src/hg/htdocs/goldenPath/help/cloud.html - lines changed 2, context: html, text, full: html, text

5f60e659684060e7dc99bbb8f6d881cea3afe825 Thu Jun 22 03:57:27 2023 -0700

• #Preview2 week - bugs introduced now will need a build patch to fix Merge branch 'master' of hgwdev.gi.ucsc.edu:/data/git/kent

25618d0f6df223ba93e263d5cf138ff9303d52ff Fri Jun 23 02:17:07 2023 -0700

• #Preview2 week - bugs introduced now will need a build patch to fix Merge branch 'master' of hgwdev.gi.ucsc.edu:/data/git/kent

cdc3b001835dd48266edca0bd125ea25942247c3 Fri Jun 23 05:07:21 2023 -0700

• fixing ct trash icon when more than one ct is loaded. adding tooltip, moving icon to the left side. refs #31504
  • src/hg/hgCustom/hgCustom.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text

fded6ce46cb167faaae559ff93b050c2b7d18ff1 Mon Jun 26 08:59:00 2023 -0700

• Porting hgGeneGraph to python3. refs #31563
  • src/hg/hgGeneGraph/README.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 150, context: html, text, full: html, text
  • src/hg/pyLib/README.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/pyLib/hgLib.py - lines changed 2, context: html, text, full: html, text
  • src/hg/pyLib/hgLib3.py - lines changed 1040, context: html, text, full: html, text
  • src/hg/pyLib/makefile - lines changed 15, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/LICENSE - lines changed 19, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/__init__.py - lines changed 185, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/_auth.py - lines changed 266, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/charset.py - lines changed 209, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/connections.py - lines changed 1367, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/CLIENT.py - lines changed 38, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/COMMAND.py - lines changed 32, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/CR.py - lines changed 68, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/ER.py - lines changed 474, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/FIELD_TYPE.py - lines changed 31, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/FLAG.py - lines changed 15, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/SERVER_STATUS.py - lines changed 10, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/constants/__init__.py - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/pyLib/pymysql/converters.py - lines changed 364, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/cursors.py - lines changed 496, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/err.py - lines changed 143, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/optionfile.py - lines changed 18, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/protocol.py - lines changed 358, context: html, text, full: html, text
  • src/hg/pyLib/pymysql/times.py - lines changed 20, context: html, text, full: html, text