Commits for lrnassar

v450_preview to v450_preview2 (2023-06-12 to 2023-06-20) v450

3ddebd74b28ec0d0734a5fb8aaaa98d70f200376 Wed Jun 14 12:08:35 2023 -0700

• Adding one more setting to changes.html page, refs #31340
  • src/hg/htdocs/goldenPath/help/trackDb/changes.html - lines changed 6, context: html, text, full: html, text

09397fdf2791a0407074e2088116ad14a77b7b6a Wed Jun 14 13:20:06 2023 -0700

• Clarifying the closure of the track hub developer list, and making some updates to the contact page in general such as removing the training URL. Refs #31340
  • src/hg/htdocs/contacts.html - lines changed 8, context: html, text, full: html, text

605ab4f36318ee83e5d1563340c5c0eaa0f88c87 Wed Jun 14 13:55:09 2023 -0700

• Squashing old pennantIcons.
  • src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV43lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/recombRate.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV43.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM32.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

b44df11903f0c8537dc9d716df324906bc89f92b Thu Jun 15 13:21:32 2023 -0700

• Adding documentation supporting snakes rearrangement display, refs #31241
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/chain.html - lines changed 23, context: html, text, full: html, text
  • src/hg/htdocs/images/rearrangementExample1.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/images/rearrangementExample2.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

f20b31ea40c4fd47327f892ebca33a3c63e8f5b4 Thu Jun 15 13:33:34 2023 -0700

• Adding a plug to rearrangement docs from the BLAT desc page, refs #31241
  • src/hg/htdocs/goldenPath/help/hgUserPsl.html - lines changed 3, context: html, text, full: html, text

a7f53180b993efb1a7484c732f9b8693e666fc76 Fri Jun 16 15:18:02 2023 -0700

• Removing a word since it can confuse and adds no value to the example, refs #31241
  • src/hg/htdocs/goldenPath/help/chain.html - lines changed 1, context: html, text, full: html, text