All File Changes

v452_preview2 to v452_base (2023-07-31 to 2023-08-07) v452

• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
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    d71b59631d13caec4b995680d714dcaed1da04fe Tue Aug 1 10:18:24 2023 -0700
    Updating text and images for the Track Duplication feature documentation, refs #30365
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 35, context: html, text, full: html, text
    527b4f1bb8292897bb4147adfcef183c4e2084ff Tue Aug 1 10:08:56 2023 -0700
    Announcing the Track Duplication feature, refs #30365
  • lines changed 1, context: html, text, full: html, text
    965c3717052e940970cdb82ecb8f1edcdd3c3578 Tue Aug 1 11:20:53 2023 -0700
    Making small edit for the Track Duplication feature announcement, refs #30365
• src/hg/htdocs/images/duplicationHgTracks2_GENCODEV43.png
  • lines changed 0, context: html, text, full: html, text
    898a180b1634246c6e6c702f7e1b2002156b64c5 Mon Jul 31 17:40:01 2023 -0700
    Adding an image for the Track Duplication feature announcement, refs #30365
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    527b4f1bb8292897bb4147adfcef183c4e2084ff Tue Aug 1 10:08:56 2023 -0700
    Announcing the Track Duplication feature, refs #30365
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    35790f88922555190ea4d4fbfceff48f2345ba26 Mon Aug 7 10:05:42 2023 -0700
    New version number v452
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    63e26d63d1b580f414936d7df42892a0de93e391 Fri Aug 4 13:23:39 2023 -0700
    adding GCF_026262505.1_NYU_TvagG3_2 Trichomonas vaginalis (G3 2022) per user request refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    63e26d63d1b580f414936d7df42892a0de93e391 Fri Aug 4 13:23:39 2023 -0700
    adding GCF_026262505.1_NYU_TvagG3_2 Trichomonas vaginalis (G3 2022) per user request refs #29545
• src/hg/makeDb/doc/mm10.txt
  • lines changed 415, context: html, text, full: html, text
    b436b166ee021405e3acfab5c851db5192797221 Sat Aug 5 16:36:20 2023 -0700
    mouse(mm39/mm10) vs. ferret/chicken/Chimp/Gorilla/Orangutan, lastz/chain/net run for user, refs #31323
• src/hg/makeDb/doc/mm39/lastzRuns.txt
  • lines changed 83, context: html, text, full: html, text
    adf2de8e2f3e4b88e27a99bffc470b615db03f1c Sat Aug 5 16:02:50 2023 -0700
    mm39 vs. GCA_921998555.2 lastz/chain/net run for user, refs #31040
  • lines changed 415, context: html, text, full: html, text
    b436b166ee021405e3acfab5c851db5192797221 Sat Aug 5 16:36:20 2023 -0700
    mouse(mm39/mm10) vs. ferret/chicken/Chimp/Gorilla/Orangutan, lastz/chain/net run for user, refs #31323
• src/hg/makeDb/trackDb/human/hg38/cactus447way.html
  • lines changed 448, context: html, text, full: html, text
    d9877981de257e115ecde895748395113523d61e Tue Aug 1 10:39:20 2023 -0700
    now with a full set of common names for 447way refs #31528
  • lines changed 44, context: html, text, full: html, text
    3f1e9854cf87814c41ace187a1baf4a3145b16e0 Fri Aug 4 11:32:51 2023 -0700
    beginning to add description text and references refs #31528
• src/hg/makeDb/trackDb/human/hg38/crossTissueMaps.ra
  • lines changed 1, context: html, text, full: html, text
    da8649831a2ed85685ce7850bd1be5df5f7138e9 Tue Aug 1 15:00:31 2023 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra
  • lines changed 2, context: html, text, full: html, text
    d9877981de257e115ecde895748395113523d61e Tue Aug 1 10:39:20 2023 -0700
    now with a full set of common names for 447way refs #31528
  • lines changed 2, context: html, text, full: html, text
    595e5c9fab7b62274d26500c1f2b83a27adf7169 Wed Aug 2 13:58:21 2023 -0700
    adding frames as they are being created refs #31528
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    5634080ec61231a0d265171e7835511dd9469cfc Wed Aug 2 15:52:03 2023 -0700
    new set of common names from Lukas refs #31528
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    334bec89611a2b6873604d15043790ed5f3a7eef Mon Jul 31 16:39:13 2023 -0700
    Deleting the include for the wgEncodeReg.dev.ra file which I deleted earlier, it was an hg38 defunct track. No RM.
  • lines changed 2, context: html, text, full: html, text
    da8649831a2ed85685ce7850bd1be5df5f7138e9 Tue Aug 1 15:00:31 2023 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    da8649831a2ed85685ce7850bd1be5df5f7138e9 Tue Aug 1 15:00:31 2023 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    da8649831a2ed85685ce7850bd1be5df5f7138e9 Tue Aug 1 15:00:31 2023 -0700
    Squashing old pennantIcons.
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    35790f88922555190ea4d4fbfceff48f2345ba26 Mon Aug 7 10:05:42 2023 -0700
    New version number v452
• src/utils/qa/longSessionCartDumps.sh
  • lines changed 1, context: html, text, full: html, text
    3056e8763035a110574d8ce2bcb00a3e31a7370f Wed Aug 2 11:42:45 2023 -0700
    Changing cartDumps files directory where the cartDumps are deleted after two weeks, refs #31585
  • lines changed 2, context: html, text, full: html, text
    a35d338e51066f7b3fa8a7198abf35234efc7af0 Fri Aug 4 16:16:36 2023 -0700
    Updated the path directory for the long-running session cart dumps, refs #31585
• src/utils/qa/makefile
  • lines changed 1, context: html, text, full: html, text
    b1267af97c89a86e03c6277b5c1d82b500d9cfdc Wed Aug 2 11:49:13 2023 -0700
    Adding and updating script that stores long-running session cart dumps and are removed after 2 weeks, refs #31585
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    1cf974285c89091d324102e2e981a5bbafc3b68f Mon Aug 7 10:01:33 2023 -0700
    v452 final build, refs #31799

• lines changed: 1484
• files changed: 26