Commits for chmalee

v455_base to v456_preview (2023-10-09 to 2023-10-16) v456

25c489a029f5644f7afa7ab5944df7556bf6dbdc Mon Oct 9 15:57:15 2023 -0700

• gbibs need to download the encode ccre track because it is a default, refs #32440
  • src/browserbox/root/updateBrowser.sh - lines changed 3, context: html, text, full: html, text

5f7b28612df1ff4e29c31020b33f8fee9c097b11 Tue Oct 10 12:35:00 2023 -0700

• Check for refseq historical old table existence before querying them for hgvs terms, refs #26016
  • src/hg/inc/hdb.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 11, context: html, text, full: html, text
  • src/hg/lib/hgHgvs.c - lines changed 6, context: html, text, full: html, text

c9ddf4ca037d9b61b462b77da54bc2f5b14726be Wed Oct 11 12:05:59 2023 -0700

• Revert historical refSeq track changes This reverts the following commits 5f7b28612df1ff4e29c31020b33f8fee9c097b11 346fa22af4717e4d8bdaa6a22a873ac4324c357b d2346420237f134dff79722739380d022c5ec48d fbcacfcd4a8baadb31fca8b07c8f831580c31c82 db4660fe604ccb1b21aa3b5dfe3421cf8ac662eb bbca1ee6f90a46e7a139434849dbf32bd206b522
  • src/hg/inc/hdb.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 11, context: html, text, full: html, text
  • src/hg/lib/hgHgvs.c - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/ncbiRefSeq.txt - lines changed 81, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/hgvsToVcf/tests/expected/clinVarChanges.err - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/hgvsToVcf/tests/expected/clinVarChanges.vcf - lines changed 1, context: html, text, full: html, text