Commits for angie

v456_preview to v456_preview2 (2023-10-16 to 2023-10-23) v456

d3ab1ece644f987c98b64f9ce8933153de6f1cb5 Mon Oct 16 10:34:15 2023 -0700

• Updated B.1.160 path and added paths for several older lineages that were not annotated correctly. Updated BA.2.86_dropout to cover more seqs. pango-designation release v1.23
  • src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 12, context: html, text, full: html, text

ae198c06b0f8b1c15ae4f28ce3b4ea6000953695 Mon Oct 23 07:20:00 2023 -0700

• More proposed (& designated) recombinants to exempt from too-many-reversions filter.
  • src/hg/utils/otto/sarscov2phylo/includeRecombinants.tsv - lines changed 76, context: html, text, full: html, text

17657a4a3318325d422492254ae14af3084d5cc7 Mon Oct 23 07:22:20 2023 -0700

• Many new lineages. Still have a backlog to annotate.
  • src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 143, context: html, text, full: html, text