All File Changes

v459_preview2 to v459_base (2024-01-02 to 2021-01-08) v459

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src/hg/hgGene/hgGeneData/Human/links.ra
- lines changed 6, context: html, text, full: html, text
  b42d55adccb651b2e4ee05c4fc4bf7d7c79051d4 Mon Jan 8 05:47:44 2024 -0800
  adding biogrid orcs link to hgGene, refs #24292
- lines changed 1, context: html, text, full: html, text
  b83560e1ad374c58d6e3f2fa917c361d34138220 Mon Jan 8 05:48:53 2024 -0800
  small change to db name, refs #24292
src/hg/hgTables/bigBed.c
- lines changed 24, context: html, text, full: html, text
  8bf8ee14d61c75fca3ea5e005b66b8c1b7ee3560 Thu Jan 4 15:20:27 2024 -0800
  add a better error message when trying to use identifiers with whole genome regions in hgTables
src/hg/hgTracks/bedTrack.c
- lines changed 2, context: html, text, full: html, text
  99f59b4dde099c52f2ced32cbe9bfcaa77478735 Mon Jan 8 03:06:54 2024 -0800
  fixing longlabel for maxWindowCoverage, and reducing jaspar window size for that, refs #32843
src/hg/hgTracks/bigBedTrack.c
- lines changed 5, context: html, text, full: html, text
  99f59b4dde099c52f2ced32cbe9bfcaa77478735 Mon Jan 8 03:06:54 2024 -0800
  fixing longlabel for maxWindowCoverage, and reducing jaspar window size for that, refs #32843
src/hg/hgTracks/hgTracks.c
- lines changed 5, context: html, text, full: html, text
  99f59b4dde099c52f2ced32cbe9bfcaa77478735 Mon Jan 8 03:06:54 2024 -0800
  fixing longlabel for maxWindowCoverage, and reducing jaspar window size for that, refs #32843
src/hg/hgc/bigBedClick.c
- lines changed 9, context: html, text, full: html, text
  d9573e3b023c7f5d3e312df94a42aeb044cb12b8 Tue Jan 2 13:39:40 2024 -0800
  protect crispr track click for no database (e.g. hub hs1) no redmine
src/hg/htdocs/indexMeetings.html
- lines changed 1, context: html, text, full: html, text
  69ebc4d6510ed5924def1ab73f7636467698993c Tue Jan 2 13:22:41 2024 -0800
  Fixing small typo about which city the conference was in, no RM.
src/hg/inc/versionInfo.h
- lines changed 1, context: html, text, full: html, text
  27a9920b341c46d62dd0f1756d441454af4a7520 Mon Jan 8 10:06:26 2024 -0800
  New version number v459
src/hg/lib/cart.c
- lines changed 3, context: html, text, full: html, text
  c772b661d511170e208547b98ecd815521ec1309 Wed Jan 3 16:57:37 2024 -0800
  adding ga4 special code to cartEmptyShell, refs #30725
src/hg/lib/web.c
- lines changed 4, context: html, text, full: html, text
  2837ed0c110b12b4549d82ffaa4f154bdb2a09c4 Mon Jan 8 04:51:09 2024 -0800
  adding GA4 code to second code that generated <HEAD>, refs #30725
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 3, context: html, text, full: html, text
  dd72294dcbb6596513d5b207088a237a3272f5b2 Fri Jan 5 12:28:09 2024 -0800
  VGP update adding 3 refs #29545
src/hg/makeDb/doc/asmHubs/mkGenomes.pl
- lines changed 21, context: html, text, full: html, text
  0d886f89f8374347018e9c0620adf111d4e7078e Thu Jan 4 12:22:56 2024 -0800
  now working with dynamic blat on genome sizes over 4 Gb no redmine
src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  dd72294dcbb6596513d5b207088a237a3272f5b2 Fri Jan 5 12:28:09 2024 -0800
  VGP update adding 3 refs #29545
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  dd72294dcbb6596513d5b207088a237a3272f5b2 Fri Jan 5 12:28:09 2024 -0800
  VGP update adding 3 refs #29545
src/hg/makeDb/trackDb/human/clinGen.html
- lines changed 4, context: html, text, full: html, text
  b7b302504081638732e3b5e8c501ae5b76bde834 Mon Jan 8 04:58:59 2024 -0800
  docs on clingen, refs #32826
src/hg/makeDb/trackDb/human/geneHancer.html
- lines changed 5, context: html, text, full: html, text
  5b32ea4a88968fb3a9d1e11d57f1dcbaa642f68e Fri Jan 5 14:03:52 2024 -0800
  Adding some clarification as to what the offsets mean in the interaction format for the GeneHancer track, refs #24330
src/hg/makeDb/trackDb/human/hg38/hprcArr.ra
- lines changed 5, context: html, text, full: html, text
  ab11bf0338b0612ec27a986b4c217610cf7f8f06 Wed Jan 3 15:51:49 2024 -0800
  Adding more description to the rearrangements track mouseOver, refs #32287
- lines changed 1, context: html, text, full: html, text
  495e3a1ef9b3ea59491c25611aa2ef8c553daa46 Fri Jan 5 16:22:37 2024 -0800
  Adding a placeholder pennantIcon while staging the track for release, refs #32287
- lines changed 1, context: html, text, full: html, text
  582c0c164e0c438a7228d6cff1d7afac9c94479c Fri Jan 5 16:24:15 2024 -0800
  Fixing bonehead mistake adding pennnatIcon, refs #32287
src/hg/makeDb/trackDb/human/hg38/hprcVCF.html
- lines changed 53, context: html, text, full: html, text
  6816c8293b5753d4f5804f89f9085bfa4cab2802 Fri Jan 5 09:44:22 2024 -0800
  Adding and updating the HPRC variants longLabel and html page, refs #32288
- lines changed 22, context: html, text, full: html, text
  112523b58746615395351e356993bfe0186ca2d9 Sun Jan 7 23:53:35 2024 -0800
  More updates to the HPRC variants longLabel, shortLabel, and html page, refs #32288
src/hg/makeDb/trackDb/human/hg38/hprcVCF.ra
- lines changed 1, context: html, text, full: html, text
  6816c8293b5753d4f5804f89f9085bfa4cab2802 Fri Jan 5 09:44:22 2024 -0800
  Adding and updating the HPRC variants longLabel and html page, refs #32288
- lines changed 6, context: html, text, full: html, text
  112523b58746615395351e356993bfe0186ca2d9 Sun Jan 7 23:53:35 2024 -0800
  More updates to the HPRC variants longLabel, shortLabel, and html page, refs #32288
src/hg/makeDb/trackDb/human/hg38/trackDb.ra
- lines changed 1, context: html, text, full: html, text
  33837f9c297034de998042219054fb13fc15b3b5 Fri Jan 5 14:46:39 2024 -0800
  Staging HPRC Short Variants track, refs #32288
- lines changed 1, context: html, text, full: html, text
  042752777f5d9134b23aaca90e964d7d668f6265 Fri Jan 5 16:21:17 2024 -0800
  Removing release tags to stage the new track in the RR. Refs #32287
src/hg/makeDb/trackDb/human/hs1/crispr.ra
- lines changed 19, context: html, text, full: html, text
  d6620d1ff150dcd17c72340c51506c570117cce3 Tue Jan 2 13:17:59 2024 -0800
  trying to turn on the crispr track for hs1 no redmine
- lines changed 1, context: html, text, full: html, text
  cff437db180ba596ef1ef336440c9b76654d9957 Tue Jan 2 13:19:14 2024 -0800
  trying to turn on the crispr track for hs1 no redmine
- lines changed 1, context: html, text, full: html, text
  90a16ae6ed11d297435551b7f39814d517c9b918 Tue Jan 2 13:28:51 2024 -0800
  trying to turn on the crispr track for hs1 no redmine
src/hg/makeDb/trackDb/human/hs1/trackDb.ra
- lines changed 2, context: html, text, full: html, text
  d6620d1ff150dcd17c72340c51506c570117cce3 Tue Jan 2 13:17:59 2024 -0800
  trying to turn on the crispr track for hs1 no redmine
src/hg/makeDb/trackDb/human/jaspar.ra
- lines changed 1, context: html, text, full: html, text
  99f59b4dde099c52f2ced32cbe9bfcaa77478735 Mon Jan 8 03:06:54 2024 -0800
  fixing longlabel for maxWindowCoverage, and reducing jaspar window size for that, refs #32843
src/hg/makeDb/trackDb/human/omimAvSnp.html
- lines changed 4, context: html, text, full: html, text
  c6cd0772baa4f7bcf41e4b2d3bc0b409d7e494b0 Mon Jan 8 05:23:45 2024 -0800
  adding omim update freq, refs #32826
src/hg/makeDb/trackDb/human/omimGene2.html
- lines changed 4, context: html, text, full: html, text
  c6cd0772baa4f7bcf41e4b2d3bc0b409d7e494b0 Mon Jan 8 05:23:45 2024 -0800
  adding omim update freq, refs #32826
src/hg/pyLib/hgLib3.py
- lines changed 3, context: html, text, full: html, text
  c772b661d511170e208547b98ecd815521ec1309 Wed Jan 3 16:57:37 2024 -0800
  adding ga4 special code to cartEmptyShell, refs #30725
src/hg/utils/otto/clinvar/clinvarSubLolly
- lines changed 2, context: html, text, full: html, text
  0ff53d0dce4284cef2a259345eb058852d094a98 Sat Jan 6 13:07:58 2024 -0800
  fix minor problem with clinvarSubLolly script that was removing the wrong file if the --alpha flag was set
src/hg/utils/otto/ottoCompareGitVsHiveFiles.py
- lines changed 1, context: html, text, full: html, text
  4d222a5ac9f584ee0723281d8f67ddb355e5fc4b Wed Jan 3 16:17:00 2024 -0800
  Adding a new otto file excemption, no RM.
src/inc/htmshell.h
- lines changed 3, context: html, text, full: html, text
  2837ed0c110b12b4549d82ffaa4f154bdb2a09c4 Mon Jan 8 04:51:09 2024 -0800
  adding GA4 code to second code that generated <HEAD>, refs #30725
src/inc/srcVersion.h
- lines changed 1, context: html, text, full: html, text
  27a9920b341c46d62dd0f1756d441454af4a7520 Mon Jan 8 10:06:26 2024 -0800
  New version number v459
src/lib/htmshell.c
- lines changed 9, context: html, text, full: html, text
  2837ed0c110b12b4549d82ffaa4f154bdb2a09c4 Mon Jan 8 04:51:09 2024 -0800
  adding GA4 code to second code that generated <HEAD>, refs #30725
src/product/installer/browserSetup.sh
- lines changed 4, context: html, text, full: html, text
  bb98ce9cdd5dd4e4e29e2b94db11cfe124bbf75c Thu Jan 4 07:05:37 2024 -0800
  had committed a broken version of the installation script, fixing that now
- lines changed 6, context: html, text, full: html, text
  51214e13eabd4d1610106195fe69a16f9759e3cf Mon Jan 8 06:28:56 2024 -0800
  changes after code review, refs #32836
src/utils/qa/searchedTermsCron.py
- lines changed 5, context: html, text, full: html, text
  fd9de5a36525c1f706433d87a293cd2bc4106bb4 Tue Jan 2 17:46:05 2024 -0800
  Updating the script to add an exception for January 1st since the script gets the five latest error logs within current year directory, No Redmine
src/utils/qa/weeklybld/buildEnv.csh
- lines changed 3, context: html, text, full: html, text
  caf314e928a3e159ba507bc365ec1a7833661014 Mon Jan 8 10:05:41 2024 -0800
  v459 final build, refs #32805

lines changed: 257
files changed: 43