File Changes for hiram

v462_preview2 to v462_base (2024-03-04 to 2024-03-11) v462

• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    1926a54bc4e7c89416dc875a086f6d1952722474 Mon Mar 4 18:37:14 2024 -0800
    adding 1 to catch up VGP refs #29545
  • lines changed 1, context: html, text, full: html, text
    2515e30c3110a44bd96a953d76bacd27adff21bf Fri Mar 8 20:45:00 2024 -0800
    adding GCA_004302925.2_ASM430292v2 Cochliomyia_hominivorax primary screw-worm per user request refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    1926a54bc4e7c89416dc875a086f6d1952722474 Mon Mar 4 18:37:14 2024 -0800
    adding 1 to catch up VGP refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    2515e30c3110a44bd96a953d76bacd27adff21bf Fri Mar 8 20:45:00 2024 -0800
    adding GCA_004302925.2_ASM430292v2 Cochliomyia_hominivorax primary screw-worm per user request refs #29545
• src/hg/makeDb/doc/panTro2.txt
  • lines changed 26, context: html, text, full: html, text
    c72e86438227987b38863408b636fa101a4cea39 Mon Mar 4 16:48:30 2024 -0800
    liftOver to panTro5 per user request refs #33047
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
  • lines changed 31, context: html, text, full: html, text
    9b8bb908c285ca4cd641ebcb9451ffda0b11ae2d Mon Mar 4 13:06:30 2024 -0800
    catching up 232 alternate assemblies refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
  • lines changed 26, context: html, text, full: html, text
    9b8bb908c285ca4cd641ebcb9451ffda0b11ae2d Mon Mar 4 13:06:30 2024 -0800
    catching up 232 alternate assemblies refs #29545
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 17, context: html, text, full: html, text
    4c31f852319ea0972f600913d61fa0a480a366bf Mon Mar 4 16:33:21 2024 -0800
    update md5sum.txt file in bigZips/genes refs #33088
• src/hg/utils/automation/doRepeatModeler.pl
  • lines changed 2, context: html, text, full: html, text
    669727c799747d9b4f298497a8c110c295b77d9c Tue Mar 5 09:52:29 2024 -0800
    add a symlink to get the families.stk.gz file delivered no redmine
  • lines changed 2, context: html, text, full: html, text
    89613f6e172824ae07651362a788cfa5ce22e762 Tue Mar 5 10:05:56 2024 -0800
    add link for rmod.log file to get it delivered to hgdownload no redmine
  • lines changed 6, context: html, text, full: html, text
    b5ae994376f6ea39fdca045b159a3cb942a36c82 Wed Mar 6 21:40:27 2024 -0800
    correct reference target for symlink of repeat modeler files to top level build dir no redmine
  • lines changed 1, context: html, text, full: html, text
    0b4bbb965c6248e94e8b1d0d3d9bc4d2a7bf0763 Thu Mar 7 22:35:55 2024 -0800
    forgot the .gz on the families.stk symLink no redmine