File Changes for jcasper

v462_preview2 to v462_base (2024-03-04 to 2024-03-11) v462

• src/hg/inc/versionInfo.h
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    b3ccd2e0dda6280a2218d9702da4c1906a9a9387 Mon Mar 11 10:41:25 2024 -0700
    New version number v462
• src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh
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    4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800
    Commit of files for knownGeneV45 build, refs #32414
• src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM34.sh
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    e84397db43e064ebc8fb853773d1e48fbdc7aa46 Wed Mar 6 10:43:19 2024 -0800
    Makedoc for knownGeneVM34, refs #32415
• src/hg/makeDb/doc/uniProt/sp240202.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
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    4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800
    Commit of files for knownGeneV45 build, refs #32414
• src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
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    4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800
    Commit of files for knownGeneV45 build, refs #32414
• src/hg/makeDb/trackDb/human/hg38/knownGeneOldV44.html
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    4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800
    Commit of files for knownGeneV45 build, refs #32414
• src/hg/makeDb/trackDb/human/hg38/knownGeneV45.html
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    4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800
    Commit of files for knownGeneV45 build, refs #32414
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800
    Commit of files for knownGeneV45 build, refs #32414
• src/hg/protein/spToDb/expected/test1/commentVal.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/accToKeyword.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/accToTaxon.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/author.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/citation.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/citationRc.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/citationRp.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/comment.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/commentType.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/commentVal.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/commonName.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/description.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/displayId.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/extDb.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/extDbRef.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/feature.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/featureClass.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/featureId.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/featureType.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/gene.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/geneLogic.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/info.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/keyword.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/organelle.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/otherAcc.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/pathogenHost.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/protein.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/proteinEvidence.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/proteinEvidenceType.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/rcType.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/rcVal.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/reference.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/referenceAuthors.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/expected/test2/taxon.txt
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/input/test1
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/input/test2
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/makefile
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/spDb.sql
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/spDbTables.as
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/protein/spToDb/spToDb.c
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    f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800
    Updates for new uniProt import, refs #30476
• src/hg/utils/otto/knownGene/buildTo.sh
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    904412b7994f145e262ec606b47a725750b7edce Wed Mar 6 10:58:24 2024 -0800
    Some updates for the knownGene pipeline, refs #32414
• src/hg/utils/otto/knownGene/genIspcrMail.sh
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    904412b7994f145e262ec606b47a725750b7edce Wed Mar 6 10:58:24 2024 -0800
    Some updates for the knownGene pipeline, refs #32414
• src/inc/srcVersion.h
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    b3ccd2e0dda6280a2218d9702da4c1906a9a9387 Mon Mar 11 10:41:25 2024 -0700
    New version number v462
• src/utils/qa/weeklybld/buildEnv.csh
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    3a40e7f28a18eaedf75388747f26e76e0611372a Mon Mar 11 10:40:46 2024 -0700
    v462 final build, refs #33051