Commits for jcasper

v462_preview2 to v462_base (2024-03-04 to 2024-03-11) v462

4e0ed5b2547fe5c4305c6bd4d9336c4800ae0276 Wed Mar 6 10:41:33 2024 -0800

• Commit of files for knownGeneV45 build, refs #32414
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra - lines changed 55, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneOldV44.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV45.html - lines changed 178, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

e84397db43e064ebc8fb853773d1e48fbdc7aa46 Wed Mar 6 10:43:19 2024 -0800

• Makedoc for knownGeneVM34, refs #32415
  • src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM34.sh - lines changed 56, context: html, text, full: html, text

904412b7994f145e262ec606b47a725750b7edce Wed Mar 6 10:58:24 2024 -0800

• Some updates for the knownGene pipeline, refs #32414
  • src/hg/utils/otto/knownGene/buildTo.sh - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/genIspcrMail.sh - lines changed 1, context: html, text, full: html, text

f2cc86e3506c2d5fefe00dbe85e7f05f0f33f43f Wed Mar 6 11:33:33 2024 -0800

• Updates for new uniProt import, refs #30476
  • src/hg/makeDb/doc/uniProt/sp240202.txt - lines changed 111, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test1/commentVal.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/protein/spToDb/expected/test2/accToKeyword.txt - lines changed 45, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/accToTaxon.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/author.txt - lines changed 24, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/citation.txt - lines changed 21, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/citationRc.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/protein/spToDb/expected/test2/citationRp.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/comment.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/commentType.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/commentVal.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/commonName.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/description.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/displayId.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/extDb.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/extDbRef.txt - lines changed 143, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/feature.txt - lines changed 45, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/featureClass.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/featureId.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/featureType.txt - lines changed 26, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/gene.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/geneLogic.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/info.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/keyword.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/organelle.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/protein/spToDb/expected/test2/otherAcc.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/protein/spToDb/expected/test2/pathogenHost.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/protein.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/proteinEvidence.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/proteinEvidenceType.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/rcType.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/protein/spToDb/expected/test2/rcVal.txt - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/protein/spToDb/expected/test2/reference.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/referenceAuthors.txt - lines changed 26, context: html, text, full: html, text
  • src/hg/protein/spToDb/expected/test2/taxon.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/protein/spToDb/input/test1 - lines changed 64, context: html, text, full: html, text
  • src/hg/protein/spToDb/input/test2 - lines changed 971, context: html, text, full: html, text
  • src/hg/protein/spToDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/protein/spToDb/spDb.sql - lines changed 19, context: html, text, full: html, text
  • src/hg/protein/spToDb/spDbTables.as - lines changed 19, context: html, text, full: html, text
  • src/hg/protein/spToDb/spToDb.c - lines changed 58, context: html, text, full: html, text

3a40e7f28a18eaedf75388747f26e76e0611372a Mon Mar 11 10:40:46 2024 -0700

• v462 final build, refs #33051
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

b3ccd2e0dda6280a2218d9702da4c1906a9a9387 Mon Mar 11 10:41:25 2024 -0700

• New version number v462
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text