Commits for jcasper

v463_base to v464_preview (2024-04-01 to 2024-04-08) v464

cde15a4447a67276ca892e129fc34a41bf61d393 Tue Apr 2 13:13:51 2024 -0700

• V46 knownGene trackDb
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV46.html - lines changed 164, context: html, text, full: html, text

f63b1ae974eb5edd85aebe6fa80bd5b1cdbd299d Thu Apr 4 11:07:40 2024 -0700

• Minor docs update for knownGeneVM35, refs #33083
  • src/hg/makeDb/trackDb/mouse/mm39/knownGeneVM35.html - lines changed 19, context: html, text, full: html, text

c18e69d83c6e7c80bae078cc840389a88e7eafc5 Thu Apr 4 11:40:26 2024 -0700

• Correcting minor typos for knownGeneV45, refs #32414
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV45.html - lines changed 4, context: html, text, full: html, text

762ac090a1deaff495eff1a1a5d0cb73e115610d Thu Apr 4 11:49:56 2024 -0700

• Makedoc for knownGeneVM35, refs #33083
  • src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM35.sh - lines changed 46, context: html, text, full: html, text

5894556e834f259943571c85b8cdb853c96673b6 Fri Apr 5 23:26:29 2024 -0700

• Docs page for knownGeneOldV45, refs #33080
  • src/hg/makeDb/trackDb/human/hg38/knownGeneOldV45.html - lines changed 10, context: html, text, full: html, text

69a0424ad6e043b05e54bf856d8937577ea2be69 Fri Apr 5 23:28:49 2024 -0700

• makedoc for knownGeneV46, refs #33080
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV46.sh - lines changed 37, context: html, text, full: html, text

441612acc3c7ca96198cf4dd282b87d05db7f357 Fri Apr 5 23:38:56 2024 -0700

• Updating link for V46 GENCODE build, refs #33080
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV46.html - lines changed 1, context: html, text, full: html, text

f5580cfac9c9893353d551984015250df67d03ec Sun Apr 7 01:11:22 2024 -0700

• Installing updated hg.conf files from UCSC servers
  • confs/asia.hg.conf - lines changed 4, context: html, text, full: html, text
  • confs/euro.hg.conf - lines changed 4, context: html, text, full: html, text
  • confs/hgwdev.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/rr.hg.conf - lines changed 3, context: html, text, full: html, text

70ecc23e4b060c8685f1ebc99f0e8e82f08d59b3 Mon Apr 8 10:56:05 2024 -0700

• Updating lib/varProtein.sql to better match the definition in spDb.sql, refs #32414
  • src/hg/lib/varProtein.sql - lines changed 2, context: html, text, full: html, text

ff3c5184034a318d7e9c854335a73b33c09e00bd Mon Apr 8 11:13:21 2024 -0700

• v464 preview1, refs #33267
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text