Commits for jnavarr5

v467_preview2 to v467_base (2024-06-17 to 2024-06-24) v467

db926c7d7e07f799d16bfe5a26a8b8d244033f0c Wed Jun 12 16:51:33 2024 -0700

• Initial commit of the new clinical tutorial, refs #33732
  • src/hg/js/tutorials/clinicalTutorial.js - lines changed 105, context: html, text, full: html, text

734d714192c9fb3f669737bca4d981986f5c63ff Wed Jun 12 17:01:33 2024 -0700

• Moving the clinicalTutorial from the tutorials directory as the symlinks part of the makefile was not working. refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 105, context: html, text, full: html, text
  • src/hg/js/tutorials/clinicalTutorial.js - lines changed 105, context: html, text, full: html, text

5d3235fdf62b23e2b11c95fa399ad8521d3e0dc3 Thu Jun 13 16:23:18 2024 -0700

• Have the tutorial selecting the RTS option from the Genome Browser menu, refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 36, context: html, text, full: html, text

30596146711f7ffce3a66d1cea443b5a4dd8d3cf Thu Jun 13 17:45:26 2024 -0700

• Adding steps for each of the recommended track sets, refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 104, context: html, text, full: html, text

997c21feccb62b291ca8db627b18578837dc902b Fri Jun 14 14:02:10 2024 -0700

• Moving commonly used functions outside of each step to clean up the code, refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 69, context: html, text, full: html, text

6a591570d7524ff058dbef8c0569cb2ef2f4ee1d Fri Jun 14 14:51:50 2024 -0700

• Opening and closing the proper pop-up box for the Recommended track sets. Removing the hidePopup() function as it is no longer needed, refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 12, context: html, text, full: html, text

1232f755d4aa14f66ee0efef07552fed021683ed Fri Jun 14 15:42:23 2024 -0700

• Adding a step to serve as the introduction to the tutorial, refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 11, context: html, text, full: html, text

8f08a5b3c0d67325263cbd77ae49c81213946997 Tue Jun 18 14:08:11 2024 -0700

• Staging the GENCODE knownGene track on beta, refs #32302
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text

c13343ae060a5a43b93da434f39f29fe0ef75e56 Fri Jun 21 10:50:56 2024 -0700

• Adding a search step to the tutorial. Now pointing to the entire pop-up box instead of individual track sets. Adding a final step for conclusion/contact info. Commenting out the Clinical SNV adn CNV steps incase they are needed in the future while developing this tutorial (Can be removed later), refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 88, context: html, text, full: html, text

042a715e5951d7455ce4e51bb96ebe9a03160bea Fri Jun 21 15:54:18 2024 -0700

• Adding the new tutorial to the makefile. Moving both tutorials to a new 'tutorials' subdirectory, refs #33732
  • src/hg/js/clinicalTutorial.js - lines changed 238, context: html, text, full: html, text
  • src/hg/js/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/js/tutorial.js - lines changed 258, context: html, text, full: html, text
  • src/hg/js/tutorials/clinicalTutorial.js - lines changed 239, context: html, text, full: html, text
  • src/hg/js/tutorials/tutorial.js - lines changed 258, context: html, text, full: html, text

6e5a3ecbd422b64e3f46980bbe47c1f9ba80fbea Fri Jun 21 16:36:16 2024 -0700

• Changing 'tour' variable to 'clinicalTour' as the javascript global namespace might be causing issues, refs #33732
  • src/hg/js/tutorials/clinicalTutorial.js - lines changed 17, context: html, text, full: html, text

75d77d7e4476f6fb3b69d9f118167cf4fca2ae27 Mon Jun 24 09:05:09 2024 -0700

• Adding the makefile for the tutorial directory, refs #33732
  • src/hg/js/tutorials/makefile - lines changed 5, context: html, text, full: html, text