Commits for hiram

v466_base to v467_preview (2024-06-03 to 2024-06-10) v467

946b6507d4026812ec3f066120fb348d3d147c2e Wed Jun 5 10:25:58 2024 -0700

• adding six for a VGP update refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text

f8fac38992ce22df69086505e80169743d57f3db Wed Jun 5 14:55:46 2024 -0700

• fix apiMel4 sciName from Anopheles_mellifera to Apis_mellifera refs #33933
  • src/hg/htdocs/images/phylo/dm6_124way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

b39cc376c8eb72d6751b3c22dff4dd89b24e9367 Wed Jun 5 16:19:08 2024 -0700

• adding 57 for an update refs #29545
  • src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 71, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 177, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 57, context: html, text, full: html, text

aa437ebc36c64962e2b4b8566f6960cf3a4b4915 Wed Jun 5 22:18:34 2024 -0700

• clean up legacy listings refs #29545
  • src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.trio.orderList.tsv - lines changed 2, context: html, text, full: html, text

d6207443ca5fe7eb379b9d8adc8ea8f53caccba8 Thu Jun 6 09:06:11 2024 -0700

• repeat modeler listings no longer available for VGP assemblies refs #29545
  • src/hg/makeDb/doc/asmHubs/mkHubIndex.pl - lines changed 2, context: html, text, full: html, text

e220327e1a9df16032838380dffac1e44db86ecc Fri Jun 7 10:36:13 2024 -0700

• sorting out legacy assemblies refs #29545
  • src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 7, context: html, text, full: html, text