All File Changes

v468_preview2 to v468_base (2024-07-08 to 2024-07-15) v468

• src/hg/hgGene/hgGene.c
  • lines changed 4, context: html, text, full: html, text
    d6559deec30443e7d05fcb19f363d891780ad420 Fri Jul 12 11:34:48 2024 -0700
    Wrap hgGene javascript in IIEF so that we avoid syntax errors about re-declared variables, refs #33216
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 35, context: html, text, full: html, text
    9c30fc6ee3f85ffd90c4133518efb20198b501eb Fri Jul 12 16:53:45 2024 -0700
    Announcing the update to knownGene for hg19 scheduled for July 31, refs #32302
• src/hg/hubApi/genomePriority.py
  • lines changed 96, context: html, text, full: html, text
    d84ccb1cf4dfe34ec488134fa7e57cd588d369e2 Mon Jul 8 19:16:17 2024 -0700
    this is now ready to clean up refs #32897
  • lines changed 116, context: html, text, full: html, text
    1b4ea94ed661ef98b094665947b23b55c13ac989 Wed Jul 10 09:41:42 2024 -0700
    one last set of dbDb to get sorted by clade properly refs #32897
  • lines changed 16, context: html, text, full: html, text
    7009c18457198f53021f03b5f8ad4e20f7b51baa Wed Jul 10 11:04:03 2024 -0700
    this is most likely complete, it does not output in priority order, outtput needs to be sorted refs #32897
  • lines changed 14, context: html, text, full: html, text
    b2c798d893c2ba4d477a91de5c02dc49455d1796 Wed Jul 10 12:52:41 2024 -0700
    correctly start priority after know browsers refs #33720
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    2b39887ff5c279d7cb931034ed9e6547fd233b62 Mon Jul 15 10:16:24 2024 -0700
    New version number v468
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    2b536304927409e52bf68441e04316be2cbaad2d Fri Jul 12 15:59:03 2024 -0700
    adding GCA_037783105.1_ASM3778310v1 Bactrocera_zonata peach fruit fly per user request refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    2b536304927409e52bf68441e04316be2cbaad2d Fri Jul 12 15:59:03 2024 -0700
    adding GCA_037783105.1_ASM3778310v1 Bactrocera_zonata peach fruit fly per user request refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
  • lines changed 2, context: html, text, full: html, text
    8a3c2ed2928bbe7092b6f8ab2566d1a4ee331df0 Wed Jul 10 23:52:53 2024 -0700
    catching up with five obsolete assemblies refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    8a3c2ed2928bbe7092b6f8ab2566d1a4ee331df0 Wed Jul 10 23:52:53 2024 -0700
    catching up with five obsolete assemblies refs #29545
• src/hg/makeDb/trackDb/human/hg38/gnomad.alpha.ra
  • lines changed 18, context: html, text, full: html, text
    6b679168c4e82b256c0b3da20621851381c9f876 Mon Jul 8 10:52:56 2024 -0700
    Fixup termRegex for gnomad track search, refs #33746
  • lines changed 16, context: html, text, full: html, text
    d7ac171e9770a6b8ea0bfaf3f4ab2f88d2e78357 Wed Jul 10 13:45:11 2024 -0700
    Moving the gnomadExomesVariantsV4_1 and the gnomadGenomesVariantsV4_1 tracks into a composite track, refs #33746
• src/hg/makeDb/trackDb/human/hg38/gnomadV4.1.html
  • lines changed 40, context: html, text, full: html, text
    6dfea657451a4d39ad774f111804da7d5a4bc6df Wed Jul 10 13:46:55 2024 -0700
    Updating the gnomAD track description page for the gnomAD v4.1 release, refs #33746
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 12, context: html, text, full: html, text
    53d47095c2c11bd94fd28679078d2382d9c42def Wed Jun 26 05:45:25 2024 -0700
    Adding pubtator dbsnp track
  • lines changed 2, context: html, text, full: html, text
    c2c071acfadf32482d9ecd311a3c0ce815d62dc7 Thu Jun 27 07:48:06 2024 -0700
    Mutation2Pubtator3 track
  • lines changed 12, context: html, text, full: html, text
    c1808e3b89db52c2f3deedf191eb3356c5b93a6f Wed Jun 26 05:45:25 2024 -0700
    Adding pubtator dbsnp track
  • lines changed 2, context: html, text, full: html, text
    39bff3d9364688ce5e60343c77b2692bbb318041 Thu Jun 27 07:48:06 2024 -0700
    Mutation2Pubtator3 track
• src/hg/makeDb/trackDb/human/varsInPubs.html
  • lines changed 2, context: html, text, full: html, text
    c2c071acfadf32482d9ecd311a3c0ce815d62dc7 Thu Jun 27 07:48:06 2024 -0700
    Mutation2Pubtator3 track
  • lines changed 2, context: html, text, full: html, text
    39bff3d9364688ce5e60343c77b2692bbb318041 Thu Jun 27 07:48:06 2024 -0700
    Mutation2Pubtator3 track
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    2b39887ff5c279d7cb931034ed9e6547fd233b62 Mon Jul 15 10:16:24 2024 -0700
    New version number v468
• src/lib/seqOut.c
  • lines changed 1, context: html, text, full: html, text
    46a9eebe0df07284263dd29329391fed3115e3c0 Mon Jul 15 09:23:40 2024 -0700
    fixing a bug that is not really a bug: underlines go through gs now, refs #34095
• src/utils/qa/qaTestScript.py
  • lines changed 15, context: html, text, full: html, text
    95f710c4308533e030ee72fd49547c82b7d376b8 Fri Jul 12 19:11:48 2024 -0700
    Replacing driver.close() with driver.quit() and adding a test case if click and drag opens a second window, no Redmine
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    b59064cc54abf1969393c342754f420e517423d4 Mon Jul 15 10:15:37 2024 -0700
    v468 final build, refs #34044

• lines changed: 417
• files changed: 24