All File Changes

v469_preview to v469_preview2 (2024-07-22 to 2024-07-29) v469

• confs/asia.hg.conf
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    2f5b6e9f82297419d1f3f8539cc37a3fcec6090e Sun Jul 28 01:11:25 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 17, context: html, text, full: html, text
    2f5b6e9f82297419d1f3f8539cc37a3fcec6090e Sun Jul 28 01:11:25 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwbeta.hg.conf
  • lines changed 18, context: html, text, full: html, text
    2f5b6e9f82297419d1f3f8539cc37a3fcec6090e Sun Jul 28 01:11:25 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
  • lines changed 17, context: html, text, full: html, text
    2f5b6e9f82297419d1f3f8539cc37a3fcec6090e Sun Jul 28 01:11:25 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 17, context: html, text, full: html, text
    2f5b6e9f82297419d1f3f8539cc37a3fcec6090e Sun Jul 28 01:11:25 2024 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cgilib/cartTrackDb.c
  • lines changed 2, context: html, text, full: html, text
    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/hg/hgGene/rnaStructure.c
  • lines changed 28, context: html, text, full: html, text
    6425a939b8a452d5187fb3cc68c059373428face Wed Jul 24 16:03:50 2024 -0700
    RNA structure picture generation should realize when the postscript file it wants to use doesn't exist, refs #34156
• src/hg/hgPcr/hgPcr.c
  • lines changed 4, context: html, text, full: html, text
    b2b326b8afc5e8b7acb2cd46bbffab500db91639 Mon Jul 22 14:16:25 2024 -0700
    adding version number to hgPcr, refs #34047
• src/hg/hgSearch/hgSearch.c
  • lines changed 2, context: html, text, full: html, text
    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/hg/htdocs/cite.html
  • lines changed 1, context: html, text, full: html, text
    eee955f8ef61e34b14de10a4887e267228439180 Fri Jul 26 14:28:51 2024 -0700
    Feedback from CR, refs #34147
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 10, context: html, text, full: html, text
    510d2ec734dc17e0acd48d76ff1065a5cdb19b0d Wed Jul 24 14:29:25 2024 -0700
    Adding a warning message to trackDbDoc page leading users to the hub doc instead, as we will no longer update the original trackDbDoc. Refs #34158
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 137, context: html, text, full: html, text
    f7efb7d4b2dd13e10e539c6be58501786d5b3aa5 Wed Jul 24 17:16:41 2024 -0700
    News announcement for evaSnp 6 tracks, refs #34119
  • lines changed 37, context: html, text, full: html, text
    71b87b8f1d09fac9e0a7e1935a11cb52bfd9f65e Wed Jul 24 17:22:53 2024 -0700
    Forgot to update links to evaSnp6 from 4, oops. Refs #34119
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    eee955f8ef61e34b14de10a4887e267228439180 Fri Jul 26 14:28:51 2024 -0700
    Feedback from CR, refs #34147
• src/hg/htdocs/inc/gbFooter.html
  • lines changed 7, context: html, text, full: html, text
    0ad16c8066621df1e4d4dd7cc1a463c94a75b233 Wed Jul 24 13:27:27 2024 -0700
    Adding 2 more footer files I forgot before, two more of our 76 individual footer files. This is to simplify the menu options, refs #33509
• src/hg/htdocs/inc/jWestFooter.html
  • lines changed 7, context: html, text, full: html, text
    0ad16c8066621df1e4d4dd7cc1a463c94a75b233 Wed Jul 24 13:27:27 2024 -0700
    Adding 2 more footer files I forgot before, two more of our 76 individual footer files. This is to simplify the menu options, refs #33509
• src/hg/htdocs/indexNews.html
  • lines changed 6, context: html, text, full: html, text
    f7efb7d4b2dd13e10e539c6be58501786d5b3aa5 Wed Jul 24 17:16:41 2024 -0700
    News announcement for evaSnp 6 tracks, refs #34119
• src/hg/inc/cStraw.h
  • lines changed 7, context: html, text, full: html, text
    c6c5c0fece6dd3a4f278a923b222c8036f363b91 Thu Jul 25 15:38:16 2024 -0700
    Needed header updates for the new Hi-C version, refs #33225
• src/hg/inc/fakeCurl.h
  • lines changed 13, context: html, text, full: html, text
    c524c55a797618abe0a485574cfcc13445c22e8b Thu Jul 25 11:52:12 2024 -0700
    Adding support for setting FAILONERROR to fakeCurl, refs #33225
• src/hg/inc/hic.h
  • lines changed 2, context: html, text, full: html, text
    c6c5c0fece6dd3a4f278a923b222c8036f363b91 Thu Jul 25 15:38:16 2024 -0700
    Needed header updates for the new Hi-C version, refs #33225
• src/hg/lib/fakeCurl.c
  • lines changed 29, context: html, text, full: html, text
    c524c55a797618abe0a485574cfcc13445c22e8b Thu Jul 25 11:52:12 2024 -0700
    Adding support for setting FAILONERROR to fakeCurl, refs #33225
• src/hg/lib/hgFind.c
  • lines changed 18, context: html, text, full: html, text
    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/hg/lib/hic.c
  • lines changed 6, context: html, text, full: html, text
    d86ddf032b97d2014a9a97b79dd9f66d9b07db13 Thu Jul 25 15:36:52 2024 -0700
    Also need to commit these for the new Hi-C setup! refs #33225
• src/hg/lib/hicUi.c
  • lines changed 4, context: html, text, full: html, text
    d86ddf032b97d2014a9a97b79dd9f66d9b07db13 Thu Jul 25 15:36:52 2024 -0700
    Also need to commit these for the new Hi-C setup! refs #33225
• src/hg/lib/straw/cStraw.cpp
  • lines changed 181, context: html, text, full: html, text
    bf996d33a7459741eea5a172a6cd891abca8e35e Thu Jul 25 11:55:13 2024 -0700
    Staging the replacement of the old straw library with the new. Hopefully this results in an easier-to-read git commit history, since the library had significant changes. refs #33225
  • lines changed 247, context: html, text, full: html, text
    ae1ef6aa226d4436d4dc9e2b9b28120d802ab8a5 Thu Jul 25 11:57:53 2024 -0700
    Dropping new straw library files into place, refs #33225
  • lines changed 1, context: html, text, full: html, text
    910378643087254ec5d8fffe664b4bf92f5e7361 Thu Jul 25 11:59:44 2024 -0700
    Final fixup for the new straw library, refs #33225
• src/hg/lib/straw/makefile
  • lines changed 2, context: html, text, full: html, text
    910378643087254ec5d8fffe664b4bf92f5e7361 Thu Jul 25 11:59:44 2024 -0700
    Final fixup for the new straw library, refs #33225
• src/hg/lib/straw/new_cStraw.cpp
  • lines changed 67, context: html, text, full: html, text
    839d2067c1871e5ffa53842f1b9c04806cf14f97 Thu Jul 25 11:51:10 2024 -0700
    The new straw library should recognize when it's doing a bad data retrieval. Also added a rudimentary way to retrieve available normalization options, refs #33225
  • lines changed 247, context: html, text, full: html, text
    ae1ef6aa226d4436d4dc9e2b9b28120d802ab8a5 Thu Jul 25 11:57:53 2024 -0700
    Dropping new straw library files into place, refs #33225
• src/hg/lib/straw/new_straw.cpp
  • lines changed 65, context: html, text, full: html, text
    839d2067c1871e5ffa53842f1b9c04806cf14f97 Thu Jul 25 11:51:10 2024 -0700
    The new straw library should recognize when it's doing a bad data retrieval. Also added a rudimentary way to retrieve available normalization options, refs #33225
  • lines changed 1755, context: html, text, full: html, text
    ae1ef6aa226d4436d4dc9e2b9b28120d802ab8a5 Thu Jul 25 11:57:53 2024 -0700
    Dropping new straw library files into place, refs #33225
• src/hg/lib/straw/new_straw.h
  • lines changed 5, context: html, text, full: html, text
    839d2067c1871e5ffa53842f1b9c04806cf14f97 Thu Jul 25 11:51:10 2024 -0700
    The new straw library should recognize when it's doing a bad data retrieval. Also added a rudimentary way to retrieve available normalization options, refs #33225
  • lines changed 132, context: html, text, full: html, text
    ae1ef6aa226d4436d4dc9e2b9b28120d802ab8a5 Thu Jul 25 11:57:53 2024 -0700
    Dropping new straw library files into place, refs #33225
• src/hg/lib/straw/straw.cpp
  • lines changed 986, context: html, text, full: html, text
    bf996d33a7459741eea5a172a6cd891abca8e35e Thu Jul 25 11:55:13 2024 -0700
    Staging the replacement of the old straw library with the new. Hopefully this results in an easier-to-read git commit history, since the library had significant changes. refs #33225
  • lines changed 1755, context: html, text, full: html, text
    ae1ef6aa226d4436d4dc9e2b9b28120d802ab8a5 Thu Jul 25 11:57:53 2024 -0700
    Dropping new straw library files into place, refs #33225
  • lines changed 1, context: html, text, full: html, text
    910378643087254ec5d8fffe664b4bf92f5e7361 Thu Jul 25 11:59:44 2024 -0700
    Final fixup for the new straw library, refs #33225
• src/hg/lib/straw/straw.h
  • lines changed 145, context: html, text, full: html, text
    bf996d33a7459741eea5a172a6cd891abca8e35e Thu Jul 25 11:55:13 2024 -0700
    Staging the replacement of the old straw library with the new. Hopefully this results in an easier-to-read git commit history, since the library had significant changes. refs #33225
  • lines changed 132, context: html, text, full: html, text
    ae1ef6aa226d4436d4dc9e2b9b28120d802ab8a5 Thu Jul 25 11:57:53 2024 -0700
    Dropping new straw library files into place, refs #33225
• src/hg/makeDb/doc/asmHubs/commonNames.py
  • lines changed 252, context: html, text, full: html, text
    10628e93d4e547ae2a2d8562f87d164e86e6ce9d Tue Jul 23 12:48:08 2024 -0700
    rewrite of commonNames.pl to fix cluster home access and speed up processing refs #33720
• src/hg/makeDb/doc/asmHubs/dynaBlatLinks.sh
  • lines changed 29, context: html, text, full: html, text
    f16809aeb7fd0420f7575692e352ca78054f4213 Tue Jul 23 16:35:51 2024 -0700
    scripts to make links for GenArk hubs into gbdb for potential copy to asia and euro nodes and dynamic blat backup directory refs #33526
• src/hg/makeDb/doc/asmHubs/gbDbLinks.sh
  • lines changed 55, context: html, text, full: html, text
    f16809aeb7fd0420f7575692e352ca78054f4213 Tue Jul 23 16:35:51 2024 -0700
    scripts to make links for GenArk hubs into gbdb for potential copy to asia and euro nodes and dynamic blat backup directory refs #33526
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 15, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/doc/evaSnp6.txt
  • lines changed 22, context: html, text, full: html, text
    711684a07793b68eabf1281c5a6cca8bd6fa2183 Wed Jul 24 16:35:34 2024 -0700
    Staging evaSnp6 track refs #34119
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/doc/hg38/470way/listOfAssembliesBirds.tsv
  • lines changed 497, context: html, text, full: html, text
    9dcc6d72472711ecf8b30d5350fe471c8122ec36 Mon Jul 22 17:58:48 2024 -0700
    listings used with speciesTable.pl refs #34112
• src/hg/makeDb/doc/hg38/470way/listOfAssembliesMammals.tsv
  • lines changed 509, context: html, text, full: html, text
    9dcc6d72472711ecf8b30d5350fe471c8122ec36 Mon Jul 22 17:58:48 2024 -0700
    listings used with speciesTable.pl refs #34112
• src/hg/makeDb/doc/hg38/470way/master.run.list
  • lines changed 2316, context: html, text, full: html, text
    9dcc6d72472711ecf8b30d5350fe471c8122ec36 Mon Jul 22 17:58:48 2024 -0700
    listings used with speciesTable.pl refs #34112
• src/hg/makeDb/doc/hg38/470way/phyloOrder.db.distance.taxId.sciName.comName.tsv
  • lines changed 469, context: html, text, full: html, text
    9dcc6d72472711ecf8b30d5350fe471c8122ec36 Mon Jul 22 17:58:48 2024 -0700
    listings used with speciesTable.pl refs #34112
• src/hg/makeDb/doc/hg38/470way/speciesTable.pl
  • lines changed 118, context: html, text, full: html, text
    4c9dc3b5a4c115f694cd3ecad26c033ebb946009 Mon Jul 22 17:50:36 2024 -0700
    script to be corrected for the 470way html table refs #34112
  • lines changed 1, context: html, text, full: html, text
    f72e6c8057d7d16c0a70c6f69a4a7d369d08d027 Fri Jul 26 00:53:51 2024 -0700
    Updating the script to get information from dbDb.hgcentral instead of dbDb.hgcentraltest, refs #34112
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    94040a0a0578aa64bd77590b35aab248b8b64bcb Tue Jul 23 14:41:22 2024 -0700
    refSeq update refs #29545
• src/hg/makeDb/scripts/evaSnp/evaSnp6.py
  • lines changed 578, context: html, text, full: html, text
    711684a07793b68eabf1281c5a6cca8bd6fa2183 Wed Jul 24 16:35:34 2024 -0700
    Staging evaSnp6 track refs #34119
• src/hg/makeDb/trackDb/evaSnp.ra
  • lines changed 108, context: html, text, full: html, text
    711684a07793b68eabf1281c5a6cca8bd6fa2183 Wed Jul 24 16:35:34 2024 -0700
    Staging evaSnp6 track refs #34119
• src/hg/makeDb/trackDb/evaSnpContainer.html
  • lines changed 215, context: html, text, full: html, text
    711684a07793b68eabf1281c5a6cca8bd6fa2183 Wed Jul 24 16:35:34 2024 -0700
    Staging evaSnp6 track refs #34119
• src/hg/makeDb/trackDb/human/covidHgiGwas.alpha.ra
  • lines changed 92, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/covidHgiGwas.ra
  • lines changed 4, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/covidTracks.alpha.ra
  • lines changed 20, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/covidTracks.ra
  • lines changed 9, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/hg38/assemblyTracks.alpha.ra
  • lines changed 46, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/hg38/assemblyTracks.ra
  • lines changed 29, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/hg38/gnomad.alpha.ra
  • lines changed 37, context: html, text, full: html, text
    16be0a84009db03ab57ef44cdb4ef6d99de1323d Thu Jul 25 16:52:13 2024 -0700
    Replacing maxWindowToDraw with maxWindowCoverage, moving maxItems to the parent stanza, and updating the Display Conventions section of the html page, refs #33746
• src/hg/makeDb/trackDb/human/hg38/gnomadV4.1.html
  • lines changed 2, context: html, text, full: html, text
    c0242ff96d8a9a9ff56bed01ba48f179d183c06f Mon Jul 22 16:43:37 2024 -0700
    More code review edits for the gnomadV4.1.html, refs #34115
  • lines changed 7, context: html, text, full: html, text
    16be0a84009db03ab57ef44cdb4ef6d99de1323d Thu Jul 25 16:52:13 2024 -0700
    Replacing maxWindowToDraw with maxWindowCoverage, moving maxItems to the parent stanza, and updating the Display Conventions section of the html page, refs #33746
• src/hg/makeDb/trackDb/human/hg38/knownGene.ra
  • lines changed 1, context: html, text, full: html, text
    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/hg/makeDb/trackDb/human/hg38/mane.ra
  • lines changed 1, context: html, text, full: html, text
    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/hg/makeDb/trackDb/human/hg38/singleCellMerged.alpha.ra
  • lines changed 21, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra
  • lines changed 3, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/human/hg38/trackDb.241way.alpha.ra
  • lines changed 75, context: html, text, full: html, text
    397acd524226a8f696ff2be2d002da883e8757ec Thu Jul 25 16:19:11 2024 -0700
    Enabling logo display on the 241 cactus alignment, refs #34065
• src/hg/makeDb/trackDb/human/hg38/trackDb.241way.ra
  • lines changed 1, context: html, text, full: html, text
    397acd524226a8f696ff2be2d002da883e8757ec Thu Jul 25 16:19:11 2024 -0700
    Enabling logo display on the 241 cactus alignment, refs #34065
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 6, context: html, text, full: html, text
    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
  • lines changed 2, context: html, text, full: html, text
    397acd524226a8f696ff2be2d002da883e8757ec Thu Jul 25 16:19:11 2024 -0700
    Enabling logo display on the 241 cactus alignment, refs #34065
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    b1fb5b817e00d2307b94f109dfc1d9bc0673ce74 Fri Jul 26 14:11:45 2024 -0700
    Staging the gnomAD v4.1 track, refs #33746
• src/hg/makeDb/trackDb/human/hs1/primateChainNet.ra
  • lines changed 313, context: html, text, full: html, text
    e84e5218cc7788651ae493ebea169f089b876f4e Thu Jul 25 11:54:40 2024 -0700
    starting composite track for primate chainNet on hs1 refs #34149
  • lines changed 278, context: html, text, full: html, text
    f0939eee2c53201f05262b72ecea28ae13f53c8c Thu Jul 25 12:40:53 2024 -0700
    now with all the alignment tracks refs #34149
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    68804ce601cb58594713ffd8304d2a4f2987bb85 Thu Jul 25 16:25:13 2024 -0700
    do not need an s on Primate refs #34149
• src/hg/makeDb/trackDb/human/hs1/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    16fc22be4fe7fbfd45ea2dbd5daf2ed2eeb22f7a Thu Jul 25 11:55:47 2024 -0700
    starting composite track for primate chainNet on hs1 refs #34149
  • lines changed 1, context: html, text, full: html, text
    b1f9a5cb433e504204136e46f5ff83bfa25ffbbb Thu Jul 25 11:56:32 2024 -0700
    starting composite track for primate chainNet on hs1 refs #34149
• src/hg/makeDb/trackDb/human/trackDb.ra
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    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
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    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
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    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
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    29447fb02c9bd28caa60d90ed60c7ba083a934be Wed Jul 24 13:58:12 2024 -0700
    catch up definitions for chainNet track on hs1 refs #34149
• src/hg/makeDb/trackDb/trackDb.mgc-orfeome.alpha.ra
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    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/trackDb.mgc-orfeome.ra
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    3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700
    Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
• src/hg/makeDb/trackDb/trackDb.ra
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    711684a07793b68eabf1281c5a6cca8bd6fa2183 Wed Jul 24 16:35:34 2024 -0700
    Staging evaSnp6 track refs #34119
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    b33e4b8402b46121cf4eab8eb9281c6b28576c25 Wed Jul 24 16:49:19 2024 -0700
    Make knownGene handled like regular tracks by hgSearch, refs #33774
• src/lib/errAbort.c
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    6b9d202ab3412dfe45a349abe82cdb8da26e9c9f Thu Jul 25 11:06:53 2024 -0700
    Remove double call to vfprintf in defaultWarn, refs #34135
• src/utils/pslMap/pslMap.c
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    87f40c4dbf6ae4e07fe0ecd8b4cb75dec6e3c0a5 Thu Jul 25 20:21:01 2024 -0700
    add option to pslMap to output TSVs for mapInfo files rather than autoSql tab format
• src/utils/pslMap/usage.txt
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    87f40c4dbf6ae4e07fe0ecd8b4cb75dec6e3c0a5 Thu Jul 25 20:21:01 2024 -0700
    add option to pslMap to output TSVs for mapInfo files rather than autoSql tab format
• src/utils/qa/weeklybld/buildEnv.csh
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    04f94965a8d453974bbe6949ef1c5d7ddd188766 Mon Jul 29 12:01:59 2024 -0700
    v469 preview2, refs #34168

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