Commits for lrnassar

v469_preview to v469_preview2 (2024-07-22 to 2024-07-29) v469

3820fe7ad2022db9e9783e53004212c867f0fff3 Wed Jul 24 13:02:20 2024 -0700

• Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.
  • src/hg/makeDb/trackDb/human/covidHgiGwas.alpha.ra - lines changed 92, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/covidHgiGwas.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/covidTracks.alpha.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/covidTracks.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/assemblyTracks.alpha.ra - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/assemblyTracks.ra - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/singleCellMerged.alpha.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.mgc-orfeome.alpha.ra - lines changed 55, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.mgc-orfeome.ra - lines changed 1, context: html, text, full: html, text

0ad16c8066621df1e4d4dd7cc1a463c94a75b233 Wed Jul 24 13:27:27 2024 -0700

• Adding 2 more footer files I forgot before, two more of our 76 individual footer files. This is to simplify the menu options, refs #33509
  • src/hg/htdocs/inc/gbFooter.html - lines changed 7, context: html, text, full: html, text
  • src/hg/htdocs/inc/jWestFooter.html - lines changed 7, context: html, text, full: html, text

510d2ec734dc17e0acd48d76ff1065a5cdb19b0d Wed Jul 24 14:29:25 2024 -0700

• Adding a warning message to trackDbDoc page leading users to the hub doc instead, as we will no longer update the original trackDbDoc. Refs #34158
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 10, context: html, text, full: html, text

711684a07793b68eabf1281c5a6cca8bd6fa2183 Wed Jul 24 16:35:34 2024 -0700

• Staging evaSnp6 track refs #34119
  • src/hg/makeDb/doc/evaSnp6.txt - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/scripts/evaSnp/evaSnp6.py - lines changed 578, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/evaSnp.ra - lines changed 108, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/evaSnpContainer.html - lines changed 215, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 77, context: html, text, full: html, text

f7efb7d4b2dd13e10e539c6be58501786d5b3aa5 Wed Jul 24 17:16:41 2024 -0700

• News announcement for evaSnp 6 tracks, refs #34119
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 137, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 6, context: html, text, full: html, text

71b87b8f1d09fac9e0a7e1935a11cb52bfd9f65e Wed Jul 24 17:22:53 2024 -0700

• Forgot to update links to evaSnp6 from 4, oops. Refs #34119
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 37, context: html, text, full: html, text

397acd524226a8f696ff2be2d002da883e8757ec Thu Jul 25 16:19:11 2024 -0700

• Enabling logo display on the 241 cactus alignment, refs #34065
  • src/hg/makeDb/trackDb/human/hg38/trackDb.241way.alpha.ra - lines changed 75, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.241way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

eee955f8ef61e34b14de10a4887e267228439180 Fri Jul 26 14:28:51 2024 -0700

• Feedback from CR, refs #34147
  • src/hg/htdocs/cite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)