File Changes for hiram

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v470_preview to v470_preview2 (2024-08-12 to 2024-08-19) v470

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src/hg/htdocs/assemblySearch.html
- lines changed 109, context: html, text, full: html, text
  fe68c1b1ff0235428aefefd9e8f68679f73f3fd6 Sat Aug 17 07:16:35 2024 -0700
  initial prototype code for assemblySearch function refs #32596
- lines changed 7, context: html, text, full: html, text
  0956e5536532f162f20c601bc3cfbf65705ef85e Sat Aug 17 08:15:54 2024 -0700
  fixup to work in this new location refs #32596
src/hg/htdocs/style/assemblySearch.css
- lines changed 165, context: html, text, full: html, text
  fe68c1b1ff0235428aefefd9e8f68679f73f3fd6 Sat Aug 17 07:16:35 2024 -0700
  initial prototype code for assemblySearch function refs #32596
src/hg/hubApi/dataApi.h
- lines changed 2, context: html, text, full: html, text
  0fdfd6d6edc06c6b9899fd1013e99fb1515babcb Fri Aug 16 00:10:32 2024 -0700
  now with the browserExists argument to eliminate the allowAll refs #32897
- lines changed 1, context: html, text, full: html, text
  04d9a71891504b2be49c6e72e9e2f80183a4b22b Fri Aug 16 14:44:31 2024 -0700
  eliminate allowAll argument, return used search string even when modified, return total assembly count available refs #32897
src/hg/hubApi/findGenome.c
- lines changed 156, context: html, text, full: html, text
  5a00dc1ab5eaaaf1776558e2fedc99997471eb73 Tue Aug 13 14:38:20 2024 -0700
  ready to start cleaning up refs #32897
- lines changed 389, context: html, text, full: html, text
  f8c0ad0bbd396785452c18d9fc3473cfb75c73a5 Tue Aug 13 15:47:21 2024 -0700
  much cleaner at this time removed all the previous experiments refs #32897
- lines changed 38, context: html, text, full: html, text
  a52bdc2dcb5068501fbc48696d7ad85e8fb2608e Tue Aug 13 17:57:48 2024 -0700
  eliminate the DBG statements and get the query string construction into a dyPrintf refs #32897
- lines changed 23, context: html, text, full: html, text
  afabfb46d123af83f0b66b48fb2d229c9fbc4df7 Wed Aug 14 16:32:27 2024 -0700
  efficient use of the SQL count function when statsOnly refs #32897
- lines changed 53, context: html, text, full: html, text
  5d9ee32b367b0cce28e02c83b20101ecbd8e8c3d Fri Aug 16 00:09:46 2024 -0700
  now with the browserExists argument to eliminate the allowAll refs #32897
- lines changed 36, context: html, text, full: html, text
  04d9a71891504b2be49c6e72e9e2f80183a4b22b Fri Aug 16 14:44:31 2024 -0700
  eliminate allowAll argument, return used search string even when modified, return total assembly count available refs #32897
- lines changed 12, context: html, text, full: html, text
  659e1bb4271552d1d1056c529298fbccb039f95d Sat Aug 17 08:29:32 2024 -0700
  recording stats on results to stderr for apache error_log refs #32596
src/hg/hubApi/hubApi.c
- lines changed 1, context: html, text, full: html, text
  a86dc83b44e3ef6ebbbe914cfba5ee145e52482e Tue Aug 13 18:17:14 2024 -0700
  correct set of arguments for findGenome refs #32897
- lines changed 1, context: html, text, full: html, text
  0fdfd6d6edc06c6b9899fd1013e99fb1515babcb Fri Aug 16 00:10:32 2024 -0700
  now with the browserExists argument to eliminate the allowAll refs #32897
- lines changed 1, context: html, text, full: html, text
  04d9a71891504b2be49c6e72e9e2f80183a4b22b Fri Aug 16 14:44:31 2024 -0700
  eliminate allowAll argument, return used search string even when modified, return total assembly count available refs #32897
src/hg/inc/assemblyList.h
- lines changed 12, context: html, text, full: html, text
  3e420ec829635a0f80f3790b312ab555d3ff2240 Tue Aug 13 18:03:07 2024 -0700
  helper function assemblyListTableName() refs #32897
src/hg/js/assemblySearch.js
- lines changed 153, context: html, text, full: html, text
  fe68c1b1ff0235428aefefd9e8f68679f73f3fd6 Sat Aug 17 07:16:35 2024 -0700
  initial prototype code for assemblySearch function refs #32596
- lines changed 1, context: html, text, full: html, text
  0956e5536532f162f20c601bc3cfbf65705ef85e Sat Aug 17 08:15:54 2024 -0700
  fixup to work in this new location refs #32596
- lines changed 15, context: html, text, full: html, text
  ff24452dd4f8ae69c2f45c1fc481b71abbafb406 Sat Aug 17 23:52:49 2024 -0700
  refresh the header row so the sorttable will function properly refs #32596
src/hg/lib/assemblyList.c
- lines changed 16, context: html, text, full: html, text
  3e420ec829635a0f80f3790b312ab555d3ff2240 Tue Aug 13 18:03:07 2024 -0700
  helper function assemblyListTableName() refs #32897
src/hg/lib/makefile
- lines changed 1, context: html, text, full: html, text
  1d9a7f5d0c88114f17c93574fb726a230a98e3f7 Tue Aug 13 18:07:40 2024 -0700
  adding assemblyList.o to the library refs #32897
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 3, context: html, text, full: html, text
  fc4f7ec33eee5a715faa117b1e2afb9fcb8a82c6 Mon Aug 12 16:44:38 2024 -0700
  update adds 3 assemblies refs #29545
- lines changed 1, context: html, text, full: html, text
  ca99ea9edfabe1feb9d487551a5c227f7dc1bca4 Mon Aug 12 16:47:32 2024 -0700
  obsolete assembly name GCA_018852615.2_ASM1885261v2 becomes GCA_018852615.2_Q100_hg002v1.0.1.mat refs #29545
- lines changed 1, context: html, text, full: html, text
  395c03c87d8620ad52f4760aa39e2b0e6b1bda24 Fri Aug 16 13:13:24 2024 -0700
  adding GCA_000845665.1_ViralProj14458 Murine herpesvirus 68 (WUMS 2007) per user request refs #29545
src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  a51acc6579a07f61464e35002581cb8860eb18d5 Mon Aug 12 13:09:36 2024 -0700
  legacy genbank yeast assembly refs #29545
src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
- lines changed 1, context: html, text, full: html, text
  cc23002f01956ee7defd57193092deb9223e7e52 Mon Aug 12 13:06:30 2024 -0700
  legacy genbank yeast assembly refs #29545
src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  cc23002f01956ee7defd57193092deb9223e7e52 Mon Aug 12 13:06:30 2024 -0700
  legacy genbank yeast assembly refs #29545
src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  234509cf8d35819a18c9abdcd2f551d33e28fb8a Mon Aug 12 13:03:12 2024 -0700
  assembly has changed its name, temporarily out of action here, no redmine
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  2a3cf8e64ff3246c8f8b9d7171f13fb1d07cbdce Mon Aug 12 13:04:49 2024 -0700
  VGP update adding tailed frog haplotypes refs #29545
src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  395c03c87d8620ad52f4760aa39e2b0e6b1bda24 Fri Aug 16 13:13:24 2024 -0700
  adding GCA_000845665.1_ViralProj14458 Murine herpesvirus 68 (WUMS 2007) per user request refs #29545
src/hg/makeDb/trackDb/human/hg38/primates11way.html
- lines changed 9, context: html, text, full: html, text
  9231a1e85252bf75c90f5e545bed1aca9acdffa4 Mon Aug 12 13:48:03 2024 -0700
  correct position=lastDbPos on the assembly hubs no redmine
src/hg/makeDb/trackDb/human/hs1/primates11way.html
- lines changed 9, context: html, text, full: html, text
  5a99f2bfa1172d32fa041ee9dfb7e2c5ed28befe Mon Aug 12 13:47:33 2024 -0700
  correct position=lastDbPos on the assembly hubs no redmine
src/hg/utils/otto/genArk/updateHgcentral.sh
- lines changed 2, context: html, text, full: html, text
  ffe3440ffaebf92cdab371616731c5b0bae27c62 Thu Aug 15 12:04:39 2024 -0700
  the addAssemblyList needs to run each week even if the other business needs no update refs #32897

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