Commits for kent

v472_preview2 to v472_base (2024-09-30 to 2024-10-07) v472

618b3d98dc6f334aaa3f287a622e6389edf282ff Mon Sep 30 19:04:19 2024 -0700

• Removing unused library dependency in makefile.
  • src/hg/encode3/encodeDataWarehouse/utils/edwSamRepeatAnalysis/makefile - lines changed 1, context: html, text, full: html, text

fd7300195f18fae0c96a61d4c7ae5b5aaed549c7 Mon Sep 30 19:06:56 2024 -0700

• Removing a fifo that worked better in theory than practice.
  • src/hg/cirm/cdw/cdwRunDaemon/cdwRunDaemon.c - lines changed 63, context: html, text, full: html, text

ce163cf46702cd8fea306a972ce85ceaff19e41d Mon Sep 30 19:09:53 2024 -0700

• Updating CDW main README and adding install instructions and a script.
  • src/hg/cirm/cdw/README - lines changed 7, context: html, text, full: html, text
  • src/hg/cirm/cdw/install/README - lines changed 71, context: html, text, full: html, text
  • src/hg/cirm/cdw/install/initQa - lines changed 93, context: html, text, full: html, text

ab8f6667e2e5c6fe1ee0731781f6efa6aef7cd24 Tue Oct 1 13:56:01 2024 -0700

• Adding fasta to the formats safely ignored.
  • src/hg/cirm/cdw/cdwMakeEnrichments/cdwMakeEnrichments.c - lines changed 1, context: html, text, full: html, text

43427b2c166a11f4adc467d69971fca322a20d3c Tue Oct 1 14:07:24 2024 -0700

• Filling in itemCount for csv files
  • src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c - lines changed 1, context: html, text, full: html, text

45d3e9c5ce59d3034e38de40df155c1cf89121a1 Tue Oct 1 14:24:41 2024 -0700

• Adding a few more things to install instructions for cdw.
  • src/hg/cirm/cdw/install/README - lines changed 15, context: html, text, full: html, text

fe1e9df6854ee9da3a5d19484d9e1f7df2fc84a0 Tue Oct 1 17:06:41 2024 -0700

• Adding new restart file for psygene server
  • src/hg/cirm/cdw/restartDaemons/psygene-restartDaemons - lines changed 9, context: html, text, full: html, text

8cc9219d0990c270849cba2159a27ad9a95a1f08 Tue Oct 1 17:29:17 2024 -0700

• Adding bits about installing bowtie and indexes. Upping validation threads.
  • src/hg/cirm/cdw/install/README - lines changed 7, context: html, text, full: html, text

f03766cd873abf02ba13b0161f784525b30d2288 Tue Oct 1 17:29:42 2024 -0700

• Merging latest CDW changes in.

178eda0f816c2044f1e5f4a87aa890c4c2c115d9 Tue Oct 1 20:08:43 2024 -0700

• Seperating out the user initialization into a script and adding groups to it too.
  • src/hg/cirm/cdw/install/README - lines changed 7, context: html, text, full: html, text
  • src/hg/cirm/cdw/install/initUsersGroups - lines changed 15, context: html, text, full: html, text