Commits for hiram

v472_base to v473_preview (2024-10-07 to 2024-10-14) v473

eaf7b44ce9439f1fca4764dfba18de5131995ce4 Wed Oct 9 12:54:21 2024 -0700

• fixup apicomplexans tsetse fly and tunicate
  • src/hg/makeDb/doc/asmHubs/commonNames.py - lines changed 7, context: html, text, full: html, text

3f5be310b86e62995312281f6521bb237c820967 Wed Oct 9 14:53:34 2024 -0700

• RefSeq update adding 106 assemblies refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 107, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 11, context: html, text, full: html, text

68207fb5ba1960173ec5460bce40789997c80e19 Wed Oct 9 16:11:26 2024 -0700

• fixup some common names and allow only 10 tracks on a fungi refs #29545
  • src/hg/makeDb/doc/asmHubs/commonNames.py - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh - lines changed 4, context: html, text, full: html, text

3afb4b5cb1585d3cca8f524fc60cc9ef2fd3f5e3 Thu Oct 10 09:07:11 2024 -0700

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 1, context: html, text, full: html, text

a5b706624d390eed8e3f0bb2e43baabdeb66769f Sat Oct 12 21:57:37 2024 -0700

• adding a couple per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 2, context: html, text, full: html, text

769e3448e21276ba591278c1394afcfccbbb08f8 Sat Oct 12 23:16:20 2024 -0700

• adding 4 viral sequences per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 4, context: html, text, full: html, text