Commits for gperez2

v473_base to v474_preview (2024-10-28 to 2024-11-04) v474

74c5e052d6546daa0cdf2962b1c1f11961832af5 Tue Oct 29 12:42:40 2024 -0700

• Adding the latest nar paper to the htdoc pages, No RM
  • src/hg/htdocs/cite.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/pubs.html - lines changed 9, context: html, text, full: html, text

5768df48d31274d029a8df6e858444ef0a355801 Tue Oct 29 16:22:07 2024 -0700

• Adding a FAQ for LiftOver output errors, refs #34665
  • src/hg/htdocs/FAQ/FAQdisplay.html - lines changed 57, context: html, text, full: html, text

1e010b388c8a7854b579399a0b18de8f1f3c8137 Wed Oct 30 11:51:17 2024 -0700

• Code review edits, refs #34676
  • src/hg/makeDb/trackDb/human/hg38/problematic.ra - lines changed 4, context: html, text, full: html, text

2234e88de4bebfb8e520d1c8c284298d12986477 Wed Oct 30 16:23:05 2024 -0700

• Adding the FAQ link for LiftOver output errors and updating the text in hgLiftOver, refs #34665
  • src/hg/hgLiftOver/hgLiftOver.c - lines changed 8, context: html, text, full: html, text

64377fb8085160f38f0f3b7158ae8c20a33b82df Wed Oct 30 16:32:17 2024 -0700

• Editing the hgLiftOver text, had two 'with', refs #34665
  • src/hg/hgLiftOver/hgLiftOver.c - lines changed 1, context: html, text, full: html, text

ececc21b1205b3589dcf50cbfefaa3626662dfd9 Thu Oct 31 16:45:16 2024 -0700

• Updating the hg38 difficult regions from GIAB to v3.5, refs #32715
  • src/hg/makeDb/trackDb/human/hg38/problematic.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/problematic.ra - lines changed 4, context: html, text, full: html, text

9adb8d6f8addb802163d0502f9f1d6094cdd56fc Thu Oct 31 17:05:29 2024 -0700

• Adding the hs1 difficult regions from GIAB track, refs #32715
  • src/hg/makeDb/trackDb/human/hs1/problematic.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hs1/problematic.ra - lines changed 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hs1/trackDb.ra - lines changed 2, context: html, text, full: html, text

09225970265680b29424b5bed22971307bde3ed5 Thu Oct 31 17:12:04 2024 -0700

• Editing the hs1 difficult regions from GIAB track, refs #32715
  • src/hg/makeDb/trackDb/human/hs1/problematic.ra - lines changed 2, context: html, text, full: html, text

1eb0e356b79b6f723aba17fa155e5d5506e913d8 Sat Nov 2 12:25:19 2024 -0700

• Removing a CADD file that was used to develop the CADD 1.7 track, refs #33940
  • src/hg/makeDb/trackDb/human/cadd.alpha.ra - lines changed 193, context: html, text, full: html, text

226f4f99c439d7f22200b0f28bf30a8816442e9d Sun Nov 3 14:21:21 2024 -0800

• Adding the makedocs for the difficult regions from GIAB track, refs #32715
  • src/hg/makeDb/doc/hg38/problematicGIAB.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/doc/hs1/problematicGIAB.txt - lines changed 49, context: html, text, full: html, text