File Changes for hiram

v475_preview2 to v475_base (2024-12-02 to 2024-12-09) v475

• src/hg/hgGateway/hgGateway.c
  • lines changed 46, context: html, text, full: html, text
    d3853cf1ab1559c73f28a8bf220aac601c16c015 Wed Dec 4 13:55:17 2024 -0800
    when search matches a dbDb name from the genArk table get that result into the dbDb list for selection refs #34862
• src/hg/htdocs/assemblySearch.html
  • lines changed 10, context: html, text, full: html, text
    9ba1f19df30d17211ebd94e05d6feb398ebc56a9 Mon Dec 9 09:33:28 2024 -0800
    updated per comments from QA refs #32596
• src/hg/js/assemblySearch.js
  • lines changed 1, context: html, text, full: html, text
    f6bb6e1854621da0de056c064007c12381326d13 Wed Dec 4 08:29:59 2024 -0800
    turn of debug flag for release refs #32596
  • lines changed 17, context: html, text, full: html, text
    9ba1f19df30d17211ebd94e05d6feb398ebc56a9 Mon Dec 9 09:33:28 2024 -0800
    updated per comments from QA refs #32596
• src/hg/makeDb/doc/asmHubs/asmHubs.mk
  • lines changed 5, context: html, text, full: html, text
    daaa29dc6598c41b9943fe3fdca994ef03186a5c Wed Dec 4 14:43:44 2024 -0800
    special rule to make the jsonData for VGP refs #34370
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 38, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 1, context: html, text, full: html, text
    9c2fdb7758fc65cddfe5db8901ed17295aa6bed1 Tue Dec 3 14:08:47 2024 -0800
    NCBI changing assembly name refs #34370
  • lines changed 9, context: html, text, full: html, text
    34e16a8f5ab2d54f1f49eb488a3bdc4951ba14b5 Thu Dec 5 14:06:59 2024 -0800
    adding a few per user request refs #29545
  • lines changed 3, context: html, text, full: html, text
    65a6374199c998a2303c455630bb45add3dd3147 Fri Dec 6 12:18:15 2024 -0800
    update per BRC request refs #34337
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    65a6374199c998a2303c455630bb45add3dd3147 Fri Dec 6 12:18:15 2024 -0800
    update per BRC request refs #34337
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 1, context: html, text, full: html, text
    9c2fdb7758fc65cddfe5db8901ed17295aa6bed1 Tue Dec 3 14:08:47 2024 -0800
    NCBI changing assembly name refs #34370
  • lines changed 89, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/brcAsmHub/brc.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    63b8ad4bd3b2ec680ea619ef7dd803019cafaed7 Fri Dec 6 12:22:40 2024 -0800
    update per BRC request refs #34337
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 10, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 56, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 13, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 6, context: html, text, full: html, text
    34e16a8f5ab2d54f1f49eb488a3bdc4951ba14b5 Thu Dec 5 14:06:59 2024 -0800
    adding a few per user request refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 8, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 2, context: html, text, full: html, text
    34e16a8f5ab2d54f1f49eb488a3bdc4951ba14b5 Thu Dec 5 14:06:59 2024 -0800
    adding a few per user request refs #29545
  • lines changed 5, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 105, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 12, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 29, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 2, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    d8fa0018fbf6e18abb5e9ba03ef6421fbf5a5693 Mon Dec 2 11:57:34 2024 -0800
    RefSeq update refs #29545
  • lines changed 2, context: html, text, full: html, text
    34e16a8f5ab2d54f1f49eb488a3bdc4951ba14b5 Thu Dec 5 14:06:59 2024 -0800
    adding a few per user request refs #29545
  • lines changed 29, context: html, text, full: html, text
    a8364911e404223901ff4cfb4e8f3f56a0e8552c Fri Dec 6 11:40:39 2024 -0800
    coordinating common names (really should be a separate unique list) refs #34370
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    8b758f1e95366bca0ee3ad1c0b5584c16647b793 Wed Dec 4 14:46:28 2024 -0800
    update to 2024-11-26 version refs #34370
• src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
  • lines changed 15, context: html, text, full: html, text
    8b758f1e95366bca0ee3ad1c0b5584c16647b793 Wed Dec 4 14:46:28 2024 -0800
    update to 2024-11-26 version refs #34370
  • lines changed 46, context: html, text, full: html, text
    e835cfc40dd1a513deb18042880fa0f6065ae422 Wed Dec 4 15:47:51 2024 -0800
    moving legacy assemblies to correct list refs #34370
• src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
  • lines changed 34, context: html, text, full: html, text
    8b758f1e95366bca0ee3ad1c0b5584c16647b793 Wed Dec 4 14:46:28 2024 -0800
    update to 2024-11-26 version refs #34370
  • lines changed 75, context: html, text, full: html, text
    e835cfc40dd1a513deb18042880fa0f6065ae422 Wed Dec 4 15:47:51 2024 -0800
    moving legacy assemblies to correct list refs #34370
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
  • lines changed 18, context: html, text, full: html, text
    8b758f1e95366bca0ee3ad1c0b5584c16647b793 Wed Dec 4 14:46:28 2024 -0800
    update to 2024-11-26 version refs #34370