File Changes for hiram

v474_base to v475_preview (2024-11-18 to 2024-11-25) v475

• src/hg/makeDb/trackDb/human/hg38/primates11way.ra
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    4d761d5a46757137d5855c9ce772777bd4dd6d8f Wed Nov 20 04:24:07 2024 -0800
    adding fastGa on 11 primates refs #34370
• src/hg/utils/otto/genArk/ncbiMirror/README.txt
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/allVerts.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/catLists.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/cladesToday.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/cronUpdate.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/fetch.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/genbank.commonNames.pl
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/genbank.sh
  • lines changed 120, context: html, text, full: html, text
    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/genbank.taxonomyNames.pl
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/genbankToDo.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/kuBatch.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/ncbiRsync.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/primates.pl
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/refseq.commonNames.pl
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/refseq.sh
  • lines changed 125, context: html, text, full: html, text
    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/refseq.taxonomyNames.pl
  • lines changed 85, context: html, text, full: html, text
    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/refseqToDo.sh
  • lines changed 133, context: html, text, full: html, text
    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/rerunHgwdev.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/rerunKu.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/runOne
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
• src/hg/utils/otto/genArk/ncbiMirror/updateLists.sh
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    abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800
    documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596