Commits for hiram

v474_base to v475_preview (2024-11-18 to 2024-11-25) v475

abbda1e28d6c297b093e998cbe6e788d36a2a04e Mon Nov 18 14:54:12 2024 -0800

• documenting the processes that maintain the NCBI hierarchy here and construct the files used for hgcentral.genark and hgcentral.assemblyList tables refs #32596
  • src/hg/utils/otto/genArk/ncbiMirror/README.txt - lines changed 274, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/allVerts.sh - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/catLists.sh - lines changed 60, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/cladesToday.sh - lines changed 44, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/cronUpdate.sh - lines changed 30, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/fetch.sh - lines changed 88, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/genbank.commonNames.pl - lines changed 92, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/genbank.sh - lines changed 120, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/genbank.taxonomyNames.pl - lines changed 85, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/genbankToDo.sh - lines changed 72, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/kuBatch.sh - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/ncbiRsync.sh - lines changed 94, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/primates.pl - lines changed 113, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/refseq.commonNames.pl - lines changed 92, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/refseq.sh - lines changed 125, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/refseq.taxonomyNames.pl - lines changed 85, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/refseqToDo.sh - lines changed 133, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/rerunHgwdev.sh - lines changed 43, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/rerunKu.sh - lines changed 40, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/runOne - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/ncbiMirror/updateLists.sh - lines changed 57, context: html, text, full: html, text

4d761d5a46757137d5855c9ce772777bd4dd6d8f Wed Nov 20 04:24:07 2024 -0800

• adding fastGa on 11 primates refs #34370
  • src/hg/makeDb/trackDb/human/hg38/primates11way.ra - lines changed 101, context: html, text, full: html, text