File Changes for markd

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v477_preview2 to v477_base (2025-01-27 to 2025-02-03) v477

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.gitignore
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  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/ameme/makefile
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  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
src/hg/liftOver/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/makeDb/hgGcPercent/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/makeDb/hgGoldGapGl/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 3, context: html, text, full: html, text
  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
- lines changed 1, context: html, text, full: html, text
  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/hg/makeDb/hgLoadBed/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
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  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/hg/makeDb/hgLoadMaf/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
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  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/hg/makeDb/hgLoadWiggle/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
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  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
src/hg/pslCDnaFilter/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/pslCDnaFilter/pslCDnaFilter.c
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/bedExtendRanges/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/chainToBigChain/makefile
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  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
src/hg/utils/gff3ToGenePred/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/gtfToGenePred/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/hubCheck/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 1, context: html, text, full: html, text
  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/hg/utils/makeTableList/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/overlapSelect/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 0, context: html, text, full: html, text
  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
src/hg/utils/overlapSelect/overlapSelect.c
- lines changed 3, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/pslLiftSubrangeBlat/makefile
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  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/pslToBigPsl/makefile
- lines changed 51, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 1, context: html, text, full: html, text
  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/hg/utils/pslToBigPsl/tests/makefile
- lines changed 1, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/hg/utils/tdbQuery/makefile
- lines changed 16, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/inc/cgiLoader.mk
- lines changed 42, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 21, context: html, text, full: html, text
  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
- lines changed 14, context: html, text, full: html, text
  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
- lines changed 1, context: html, text, full: html, text
  3542507725a5bdeceaf09f2e8376bbe5808a6a08 Sun Jan 19 13:45:13 2025 -0800
  use user cgi-bin for default make
src/inc/cgiVars.mk
- lines changed 26, context: html, text, full: html, text
  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
- lines changed 4, context: html, text, full: html, text
  3542507725a5bdeceaf09f2e8376bbe5808a6a08 Sun Jan 19 13:45:13 2025 -0800
  use user cgi-bin for default make
- lines changed 4, context: html, text, full: html, text
  8f59e41056ede9739e9b9ea81d52443c18ad90dd Tue Jan 21 22:14:04 2025 -0800
  with specific user
src/inc/cgi_build_rules.mk
- lines changed 23, context: html, text, full: html, text
  1c002ea441ef48d4580156e0e80f23a8b7dc3eec Sun Jan 19 13:05:19 2025 -0800
  CGI loaders working
src/inc/common.mk
- lines changed 40, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 14, context: html, text, full: html, text
  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
- lines changed 1, context: html, text, full: html, text
  8f59e41056ede9739e9b9ea81d52443c18ad90dd Tue Jan 21 22:14:04 2025 -0800
  with specific user
src/inc/userApp.mk
- lines changed 27, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 3, context: html, text, full: html, text
  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
- lines changed 6, context: html, text, full: html, text
  c2da02cbbc11577b49eddb96740144ec4f24e872 Tue Jan 28 18:59:29 2025 -0800
  add script to check that SEMI_STATIC userApp are linked with only the allowed shared libraries
src/makefile
- lines changed 1, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
src/utils/bedToBigBed/makefile
- lines changed 64, context: html, text, full: html, text
  4d1132fe8af3037e9bc3f4ff419151cebcc10fc1 Sun Jan 19 11:28:49 2025 -0800
  userApps working as before on hgwdev
src/utils/makefile
- lines changed 6, context: html, text, full: html, text
  07639647efe6cfe6dbc643b8fae13c3dd153c528 Fri Jan 17 19:07:18 2025 -0800
  work on docker utils build
- lines changed 1, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/qa/weeklybld/makeUserApps.csh
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  f1e2c1529d1222a0793a30bc4997a65e6f6694c9 Wed Jan 22 07:40:55 2025 -0800
  run docker as current user
src/utils/qa/weeklybld/userApps.dockerfile
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  8f59e41056ede9739e9b9ea81d52443c18ad90dd Tue Jan 21 22:14:04 2025 -0800
  with specific user
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  f1e2c1529d1222a0793a30bc4997a65e6f6694c9 Wed Jan 22 07:40:55 2025 -0800
  run docker as current user
src/utils/qa/weeklybld/userAppsCheckLinking
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  c2da02cbbc11577b49eddb96740144ec4f24e872 Tue Jan 28 18:59:29 2025 -0800
  add script to check that SEMI_STATIC userApp are linked with only the allowed shared libraries
src/utils/qa/weeklybld/userAppsCompileInDocker
- lines changed 48, context: html, text, full: html, text
  8f59e41056ede9739e9b9ea81d52443c18ad90dd Tue Jan 21 22:14:04 2025 -0800
  with specific user
- lines changed 29, context: html, text, full: html, text
  f1e2c1529d1222a0793a30bc4997a65e6f6694c9 Wed Jan 22 07:40:55 2025 -0800
  run docker as current user
- lines changed 11, context: html, text, full: html, text
  c2da02cbbc11577b49eddb96740144ec4f24e872 Tue Jan 28 18:59:29 2025 -0800
  add script to check that SEMI_STATIC userApp are linked with only the allowed shared libraries
- lines changed 3, context: html, text, full: html, text
  ed2c9e2f464996fffa38546987be244ada38c07a Fri Jan 31 19:42:06 2025 -0800
  echo the docker run command when building userApps
src/utils/qa/weeklybld/userAppsCreateDockerImage
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  8f59e41056ede9739e9b9ea81d52443c18ad90dd Tue Jan 21 22:14:04 2025 -0800
  with specific user
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  f1e2c1529d1222a0793a30bc4997a65e6f6694c9 Wed Jan 22 07:40:55 2025 -0800
  run docker as current user
src/utils/tabFmt/makefile
- lines changed 3, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tabFmt.c
- lines changed 274, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/expected/defaultTest.txt
- lines changed 8, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/expected/numRightPassNoTabTest.txt
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  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/expected/numRightTest.txt
- lines changed 8, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/expected/passNoTabTest.txt
- lines changed 13, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/expected/rightTest.txt
- lines changed 8, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/expected/specialTest.txt
- lines changed 3, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/input/basic.tab
- lines changed 8, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/input/numRightPassNoTab.tab
- lines changed 15, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/input/special.tab
- lines changed 3, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/input/statsLabels.tab
- lines changed 13, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand
src/utils/tabFmt/tests/makefile
- lines changed 39, context: html, text, full: html, text
  7478677e5ba8806f2ffde474524dccd6fc37ed72 Thu Jan 30 20:10:01 2025 -0800
  added my old tabFmt command due to popular demand

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