Commits for braney

v477_base to v478_preview (2025-02-03 to 2025-02-10) v478

0b9c2a6f9930555f65104385a9edcb00147a5bc6 Mon Feb 3 09:31:56 2025 -0800

• add support for quikLifting mySQL beds.
  • src/hg/hgTracks/bedTrack.c - lines changed 45, context: html, text, full: html, text
  • src/hg/inc/quickLift.h - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/quickLift.c - lines changed 94, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 8, context: html, text, full: html, text

49f31ee05d781083f1a9b7fcff2e99b974622c41 Tue Feb 4 09:06:51 2025 -0800

• add custom tracks
  • src/hg/hgTracks/bedTrack.c - lines changed 18, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 26, context: html, text, full: html, text

7f8b631eb54a42bd40d48dcdd85103cbc97ae534 Tue Feb 4 09:59:00 2025 -0800

• pull out table named based handling into a separate function that can be avoided if desired.
  • src/hg/hgc/hgc.c - lines changed 36, context: html, text, full: html, text

1c7d36e357be58d14a6bc36bb1438f44743cfb08 Wed Feb 5 09:09:23 2025 -0800

• fix problem with hgc complaining about the click not doing anything
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text

37d8f22d578c0cb7ed85aea230424db6eb22585e Wed Feb 5 12:41:16 2025 -0800

• mv cartTrackDb.c and wikiTrack.c into hg/lib
  • src/hg/cgilib/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/cartTrackDb.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/lib/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/wikiTrack.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

11bc4be74936249529960fb3a532376779debbe5 Thu Feb 6 11:06:45 2025 -0800

• add hgc support for click throughs on quickLifted custom tracks
  • src/hg/hgTracks/bedTrack.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 40, context: html, text, full: html, text
  • src/hg/inc/quickLift.h - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/quickLift.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 11, context: html, text, full: html, text

e9cbd875e607d5774dfbc19ff8c389ff9ec851f6 Thu Feb 6 12:09:35 2025 -0800

• make quickLift chain from hg19 to hg38
  • src/hg/makeDb/doc/hg19.txt - lines changed 20, context: html, text, full: html, text