Commits for gperez2

v478_preview to v478_preview2 (2025-02-10 to 2025-02-17) v478

f4a0cd933ac7de57b77e8376123c4a14e594152a Thu Feb 6 17:02:05 2025 -0800

• Updating the SpliceVarDB methods section, refs #34424
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.html - lines changed 4, context: html, text, full: html, text

9e8e008199b18a7e418b99f246d6434d6daa72ca Mon Feb 10 17:42:56 2025 -0800

• Staging the SpliceVarDB track with the Splicing Impact super track, refs #34424
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/splicevardb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

623bc1182990ea8ca9c9e219906ef1a1c4a799c3 Mon Feb 10 18:07:31 2025 -0800

• Fixing longLabel for SpliceVarDB and keeping 'SpliceVarDB' string consistent in the track description page, refs #34424
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/splicevardb.ra - lines changed 1, context: html, text, full: html, text

eed605180384e7782a79dde4a364e7c82a0c647d Mon Feb 10 22:20:22 2025 -0800

• Nesting abSplice and spliceAI tracks into the spliceImpactSuper track, refs #34823
  • src/hg/makeDb/trackDb/human/abSplice.alpha.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.alpha.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.alpha.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 4, context: html, text, full: html, text

54f66cad4f181133ae0afc8a55695adfd649e3ba Mon Feb 10 22:28:46 2025 -0800

• Revert "Nesting abSplice and spliceAI tracks into the spliceImpactSuper track, refs #34823" This reverts commit eed605180384e7782a79dde4a364e7c82a0c647d.
  • src/hg/makeDb/trackDb/human/abSplice.alpha.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.alpha.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.alpha.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 4, context: html, text, full: html, text

458c39ae52c6c4b06445115e209306357c4f923a Wed Feb 12 14:58:38 2025 -0800

• Updating the varChat description page, refs ##35081
  • src/hg/makeDb/trackDb/human/varChat.html - lines changed 29, context: html, text, full: html, text

08be5093ab6c4535c129810cc78f840c5aca3c8a Thu Feb 13 14:19:52 2025 -0800

• Nesting abSplice and spliceAI tracks into the spliceImpactSuper track, refs #34823
  • src/hg/makeDb/trackDb/human/abSplice.alpha.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.alpha.ra - lines changed 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.alpha.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 4, context: html, text, full: html, text

e1b63a7fd5a0b68c80498f913785b4ddf2926998 Fri Feb 14 18:48:26 2025 -0800

• Updated the pennantIcon for the Variants in Papers and the VarChat track, refs #35081
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text