File Changes for gperez2

v480_preview2 to v480_base (2025-03-31 to 2025-04-07) v480

• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 41, context: html, text, full: html, text
    b7617abed29abc5f50b1a22b1d282e043ae77a52 Mon Mar 31 15:35:38 2025 -0700
    Announcing the release of the hg38 Pseudogenes track, refs #30563
  • lines changed 2, context: html, text, full: html, text
    ff6f53780763ad8defc98f6d3f52e134024d0df5 Tue Apr 1 00:19:26 2025 -0700
    Updating the Pseudogenes newsArch track image, refs #30563
  • lines changed 2, context: html, text, full: html, text
    7ae31b7f204c16809e8c201af7a26a33bf4a20df Tue Apr 1 14:18:30 2025 -0700
    Adding more info for the grey blocks and updating the text for the color-coded pseudogene types, refs #30563
• src/hg/htdocs/images/newsArchImages/Pseudogenes.jpg
  • lines changed 0, context: html, text, full: html, text
    b7617abed29abc5f50b1a22b1d282e043ae77a52 Mon Mar 31 15:35:38 2025 -0700
    Announcing the release of the hg38 Pseudogenes track, refs #30563
• src/hg/htdocs/images/newsArchImages/PseudogenesTrack.jpg
  • lines changed 0, context: html, text, full: html, text
    ff6f53780763ad8defc98f6d3f52e134024d0df5 Tue Apr 1 00:19:26 2025 -0700
    Updating the Pseudogenes newsArch track image, refs #30563
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    b7617abed29abc5f50b1a22b1d282e043ae77a52 Mon Mar 31 15:35:38 2025 -0700
    Announcing the release of the hg38 Pseudogenes track, refs #30563
• src/hg/js/tutorials/gatewayTutorial.js
  • lines changed 122, context: html, text, full: html, text
    a89d2c4aa3a3c6462db0f6d964463f26d0d9a48c Thu Apr 3 17:19:29 2025 -0700
    Adding the gateway tutorial js file, refs #35464
• src/hg/makeDb/doc/mm39/lastzRuns.txt
  • lines changed 85, context: html, text, full: html, text
    84655d205f74a77b773c1b25e89a42e37d913158 Sat Apr 5 17:03:53 2025 -0700
    mm39 to platypus (GCF_004115215.2) lastz/chain/net run for user, refs #35448
• src/hg/makeDb/trackDb/human/hg38/pseudogenes.html
  • lines changed 7, context: html, text, full: html, text
    7ae31b7f204c16809e8c201af7a26a33bf4a20df Tue Apr 1 14:18:30 2025 -0700
    Adding more info for the grey blocks and updating the text for the color-coded pseudogene types, refs #30563
• src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra
  • lines changed 1, context: html, text, full: html, text
    b7617abed29abc5f50b1a22b1d282e043ae77a52 Mon Mar 31 15:35:38 2025 -0700
    Announcing the release of the hg38 Pseudogenes track, refs #30563
• src/hg/makeDb/trackDb/patchTracks.new.ra
  • lines changed 2, context: html, text, full: html, text
    2afb0b02aca7612ab8dc1bc6c7751eacd16f5c59 Thu Apr 3 09:32:12 2025 -0700
    Adding Alignment Gap/Insertion Display settings for the GRC Patches composite track that are default in both Fix Patches and Alt Haplotypes track, refs #35326
• src/hg/utils/otto/lrg/lrgWrapper.sh
  • lines changed 1, context: html, text, full: html, text
    cb1c4abd76722d2f3dc7e767022b7b812573ec5a Wed Apr 2 16:40:10 2025 -0700
    Updating the cron since the , is causing issues, No RM
• src/utils/qa/checkHTTPS
  • lines changed 1, context: html, text, full: html, text
    4c08e95f2e342747adc45d6af6a3d70d4242c440 Tue Apr 1 14:47:42 2025 -0700
    Removing hgdownload-euro.soe.ucsc.edu since Erich shares that is redundant to genome-euro.ucsc.edu, No RM