Commits for hiram

88186f40302551f7d9456e7301cd56425dbbf2e0 Mon May 5 15:06:00 2025 -0700

adding one per user request and two for VGP project refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 3, context: html, text, full: html, text

65bc0021edc8878d6861e83ab37296f87103b898 Tue May 6 12:56:57 2025 -0700

new lamprey assemblies in the group now refs #34370
- src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 2, context: html, text, full: html, text

fa28303fd20c645f13b7347c4cab55a799d1c3b6 Tue May 6 22:28:19 2025 -0700

adding one per user request refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 1, context: html, text, full: html, text

92afba7ab4f9b4a0619cb8a80ae54a4eb9be3b9e Wed May 7 12:03:17 2025 -0700

customize names for ants, dinoflagellates, bacteria, hemichordates refs #29545
- src/hg/makeDb/doc/asmHubs/commonNames.py - lines changed 9, context: html, text, full: html, text

3b3a15ba837cd80d8e70bff2b773c66b9fee8107 Wed May 7 12:04:38 2025 -0700

adding 177 for BRC update refs #34337
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 177, context: html, text, full: html, text
- src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 183, context: html, text, full: html, text

0eba8112653958cc651326c62e83641e97fff5dd Wed May 7 14:21:25 2025 -0700

another 13 bacteria for BRC project refs #34337
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 13, context: html, text, full: html, text

785e9e4c01c8a4e2245075b8ceb26af14b8714e9 Thu May 8 10:10:32 2025 -0700

the GCF_010993605.1_kPetMar1.pri and GCA_010993595.1_kPetMar1.alt are not legacy refs #34370
- src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 2, context: html, text, full: html, text

45c067e0e154c3b5f52fe8e0cb013e3a6367bfb3 Fri May 9 11:47:18 2025 -0700

avoid sending out alpha,beta,public hub.txt files refs #34917
- src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh - lines changed 6, context: html, text, full: html, text

14e4b15c9378c56eba5fb0468be87948c00fde32 Fri May 9 11:56:11 2025 -0700

cron scripts pushing from hgwdev to mirrors and asia pulling from hgwdev refs #34917
- src/hg/utils/otto/genArk/pullHgwdev.sh - lines changed 25, context: html, text, full: html, text
- src/hg/utils/otto/genArk/pushRR.sh - lines changed 28, context: html, text, full: html, text

7c5b8bf0c51d84ddd36ca38da30cd7a38e186c1d Fri May 9 11:59:34 2025 -0700

note about cron scripts pushing from hgwdev to mirrors and asia pulling from hgwdev refs #34917
- src/hg/utils/otto/genArk/README - lines changed 7, context: html, text, full: html, text

8dbae0dc03900f90cf27c96aefb8996591edc7e1 Mon May 12 12:39:19 2025 -0700

construction symLinks for contrib tracks refs #34917
- src/hg/makeDb/doc/asmHubs/mkSymLinks.pl - lines changed 18, context: html, text, full: html, text

b05cf2ee1aa3b2e4621cfe48377a18720d31f232 Mon May 12 16:25:08 2025 -0700

adding 1 per user request refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 1, context: html, text, full: html, text