Commits for lrnassar

v485_preview2 to v485_base (2025-07-14 to 2025-07-21) v485

c3c5193ee9746f33a63f7b66470945885d993576 Mon Jul 14 15:59:30 2025 -0700

• Fixing a view typo that was preventing the per capture model views from showing, and adding the right formatting to the desc page. Refs #35122
  • src/hg/makeDb/trackDb/human/hg38/clsLongReadRna.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/clsLongReadRna.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.ra - lines changed 2, context: html, text, full: html, text

26104d2d2816d1fb66d610bfa3af0ef58c13bb40 Mon Jul 14 16:40:34 2025 -0700

• Clarifying which assemblies the tracks are on, and removing release tags. Refs #35806
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.ra - lines changed 4, context: html, text, full: html, text

226898981d9edeea42f4c8bfb7eef501cbf770ac Tue Jul 15 14:55:19 2025 -0700

• Announcing two new pathogenicity prediction tracks, refs #35806 #35922
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 28, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

7e925f3a94c8253930cc591727980af204b95f04 Tue Jul 15 15:03:43 2025 -0700

• Fixing MCAP track that linked to MutScore, refs #35806 #35922
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

f04a16bbb43853853b66f95e841eba47476424ea Wed Jul 16 15:22:34 2025 -0700

• Make hgLogin excempt from the captcha, refs #36089
  • src/hg/lib/cart.c - lines changed 2, context: html, text, full: html, text

ae186fdfc2fc08fcf80d80ee099cfbed07ad773e Thu Jul 17 13:19:38 2025 -0700

• Clarifying that type bigChain needs to have the targetDb specified, refs #35948
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 2, context: html, text, full: html, text

196c5cd4c64b6767430e9aeb4c825efb40e43ab5 Thu Jul 17 13:29:33 2025 -0700

• Removing www and old email reference in favor of a single ML for all licensing questions. Refs #35170
  • src/hg/htdocs/license/index.html - lines changed 8, context: html, text, full: html, text

87753ed6a5ebbc04ad58ab9a457b2fe403415b3a Thu Jul 17 15:28:00 2025 -0700

• Quietly retiring GBiB in favor of GBiC/docker, refs #35611
  • src/hg/htdocs/goldenPath/help/gbic.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/mirror.html - lines changed 85, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/mirrorManual.html - lines changed 6, context: html, text, full: html, text
  • src/product/README.txt - lines changed 58, context: html, text, full: html, text
  • src/product/mirrorManual.txt - lines changed 6, context: html, text, full: html, text

9dd586e55ee314f53581859ac9bd2a22b7df8e09 Thu Jul 17 16:24:10 2025 -0700

• Changing link to be relative, no RM.
  • src/product/README.txt - lines changed 1, context: html, text, full: html, text

09335ca4d77990f9dc3bb12aeb48c7d4a0eec3e6 Thu Jul 17 16:25:34 2025 -0700

• Revert "Changing link to be relative, no RM." This reverts commit 9dd586e55ee314f53581859ac9bd2a22b7df8e09. This is because this page needs absolute links as it lives on github.
  • src/product/README.txt - lines changed 1, context: html, text, full: html, text

aa9e3855a9fcfdce411168009e1d14cff6ac4155 Fri Jul 18 12:16:52 2025 -0700

• Feedback from CR, refs #36086
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gencodePfam.html - lines changed 2, context: html, text, full: html, text