Commits for jnavarr5

v485_base to v486_preview (2025-07-21 to 2025-07-28) v486

1682d0bc59a928306f37e31bf9ea7d4816873dee Mon Jul 21 16:56:56 2025 -0700

• Updating the location of the makedoc for the bionano track, refs #36033
  • src/hg/makeDb/doc/hg19.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/exomeProbesets.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 4, context: html, text, full: html, text

f386e652ab6429e9c39164b3726a4d23a7ca5b70 Mon Jul 21 17:07:52 2025 -0700

• Adding the methods and credits for the Bionano track, refs #36033
  • src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/genotypeArrays.html - lines changed 10, context: html, text, full: html, text

01275fbbee45b5ffa715fce55bca1ccf6281e05a Mon Jul 21 17:08:50 2025 -0700

• Fixing a typo with 'Agilent', no Redmine
  • src/hg/makeDb/trackDb/human/hg38/genotypeArrays.html - lines changed 1, context: html, text, full: html, text

70c3ee1d28c4b11d3f3fa544b021ef13930ee795 Mon Jul 21 17:11:28 2025 -0700

• Removing the color for the Bionano track since it is no longer needed, refs #36033
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

7b9fe6166c3e9648ea33f12eb12c1e2a77651237 Tue Jul 22 11:16:01 2025 -0700

• Updating the header tags to match the other tracks, refs #36033
  • src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html - lines changed 1, context: html, text, full: html, text

366647a1f03839959cc28f62c1f8889e83bf823c Tue Jul 22 11:19:52 2025 -0700

• Removing the release tags to stage on the RR, refs #36033
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

1cfb42e3aebf071c9010146a56fbb4138403ca1d Tue Jul 22 12:19:19 2025 -0700

• Moving the makedoc for the Bionano track to the parent text file (genotypeArrays.txt), refs #36033
  • src/hg/makeDb/doc/hg38/genotypeArrays.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 6, context: html, text, full: html, text

d5814fcd19322db60a01f365b152cb202ed89489 Wed Jul 23 09:53:10 2025 -0700

• Making changes from code review, refs #36118
  • src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/genotypeArrays.html - lines changed 1, context: html, text, full: html, text

b03430ed0a650b5d4f644ed65b0a9e7fac1aeaf4 Wed Jul 23 15:32:36 2025 -0700

• Announcing the Bionano track for hg38 and hg19, refs #36033
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 24, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

f8ab4521716f62297723211e07e55df0bb660e0f Wed Jul 23 15:46:49 2025 -0700

• Making some typo and styling changes, refs #36033
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 4, context: html, text, full: html, text

70c69f60b5b41a3e4d13998acb8793036ad35445 Thu Jul 24 12:17:48 2025 -0700

• Removing the .html from trackDb's html line, refs #35957
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

5ffcdbf56df3d1ef3ba5928d2d9154a32f600b03 Thu Jul 24 12:21:21 2025 -0700

• Uncommenting the PubTator3 track for human, refs #35957
  • src/hg/makeDb/trackDb/human/varsInPubs.html - lines changed 2, context: html, text, full: html, text

fd736e33849e54fe10802e3c675564feac322e6d Thu Jul 24 12:30:57 2025 -0700

• Capitalizing the V in variants to match the other tracks, refs #35957
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text