Commits for max

v489_base to v490_preview (2025-10-13 to 2025-10-20) v490

85e8f7400bfa53d4189f56729b3a12718f734125 Mon Oct 13 14:20:01 2025 -0700

• closing all hgcentral mysql connections before botDelay sleeping, refs #36498
  • src/hg/inc/hdb.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/botDelay.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 6, context: html, text, full: html, text

0331318608a7b0d0fae33908a6229f7bae06341a Tue Oct 14 01:58:39 2025 -0700

• change after code review, refs #36507
  • src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text

c9f42961046e744998bbaf939cfd3e7a37fd117f Tue Oct 14 02:58:59 2025 -0700

• changing how hgcentral connection is treated when an API key is supplied, open a connection and close it right afterwards, to make sure that no sleeping CGIs clog mysql connections, refs #36498
  • src/hg/hgHubConnect/hooks/pre-create.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgHubConnect/hooks/pre-finish.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hdb.h - lines changed 2, context: html, text, full: html, text
  • src/hg/inc/hubSpaceKeys.h - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/botDelay.c - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hubSpaceKeys.c - lines changed 11, context: html, text, full: html, text

fdd4eaea8cdd5dd4e2d895ae3249957859eb278b Tue Oct 14 03:12:17 2025 -0700

• change after code review, refs #36477
  • src/hg/lib/cart.c - lines changed 1, context: html, text, full: html, text

80f55de280d3cc483b772c1d02dd88b6bc1cf173 Thu Oct 16 03:01:55 2025 -0700

• adding an apache logfile line when apiKey is recognized, refs #36428
  • src/hg/lib/cart.c - lines changed 8, context: html, text, full: html, text

ad92b87bb799c20abccadf1f923972c1a9b6a6e7 Fri Oct 17 06:39:16 2025 -0700

• adding gnomad mpc track, ref #36531
  • src/hg/makeDb/doc/hg19.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/gnomadMpcToBed.py - lines changed 85, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/mpc.as - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gnomadMpc.html - lines changed 94, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 15, context: html, text, full: html, text

bbbf04b6ba676852d67c27718a02beb7a764b76f Fri Oct 17 06:59:10 2025 -0700

• more docs for previous commit
  • src/hg/makeDb/trackDb/human/hg19/gnomad.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.html - lines changed 2, context: html, text, full: html, text