File Changes for hiram

v490_preview to v490_preview2 (2025-10-20 to 2025-10-27) v490

• src/hg/hubApi/findGenome.c
  • lines changed 5, context: html, text, full: html, text
    e01e278779d39155f4a30916f45faa9828948610 Wed Oct 22 13:18:54 2025 -0700
    turn off the apache log recording for findGenome results no redmine
• src/hg/utils/automation/HgAutomate.pm
  • lines changed 4, context: html, text, full: html, text
    2dc78bc27b010545f6af079b46fe1b94b472e90d Mon Oct 27 12:43:42 2025 -0700
    fixup error in help message for fileServer refs #35575
• src/hg/utils/automation/doSameSpeciesLiftOver.pl
  • lines changed 17, context: html, text, full: html, text
    c71e68a92e5d8d8393e7883f8dee5d9695ae7373 Mon Oct 27 12:45:05 2025 -0700
    ram size only needs to be 3Gb and create the quick.lift files still needs the addQuickLift.py addition refs #35575
• src/hg/utils/automation/makefile
  • lines changed 1, context: html, text, full: html, text
    a7ecad52c1043982f9fb7818f753fd419d587e51 Mon Oct 27 12:46:14 2025 -0700
    add the addQuickLift.py to the scripts directory refs #35575
• src/hg/utils/otto/genArk/README
  • lines changed 8, context: html, text, full: html, text
    3eda4bcc9f4d46c9d261f669272765dd7b4e657a Thu Oct 23 12:11:46 2025 -0700
    not new push procedure from hgwdev to only hgwbeta
• src/hg/utils/otto/genArk/alphaBetaPush.pl
  • lines changed 1, context: html, text, full: html, text
    8d9d8756a819939ab5546289d7722489fbdab44c Tue Oct 21 10:42:12 2025 -0700
    this should only push out to hgwbeta and hgw0, does not need to push to the RR, that is cluster admin territory refs #35575
  • lines changed 190, context: html, text, full: html, text
    22cbda5e72a0c4429edad0eb3a8545ca0abe1b7c Tue Oct 21 10:59:15 2025 -0700
    obsolete copy of this script refs #35575
• src/hg/utils/otto/genArk/devList.sh
  • lines changed 2, context: html, text, full: html, text
    3f93380b226036b64a4f43c0cae6701109e04c1d Thu Oct 23 11:56:14 2025 -0700
    sorting the file listings so everything is the same everywhere and making up the push list for admin rsync cron scripts
• src/hg/utils/otto/genArk/gbDbGenArkList.sh
  • lines changed 2, context: html, text, full: html, text
    3f93380b226036b64a4f43c0cae6701109e04c1d Thu Oct 23 11:56:14 2025 -0700
    sorting the file listings so everything is the same everywhere and making up the push list for admin rsync cron scripts
• src/hg/utils/otto/genArk/pushNewOnes.sh
  • lines changed 5, context: html, text, full: html, text
    8f6315dbca0175c9de974e7d4a9baa8fb040583e Tue Oct 21 10:38:44 2025 -0700
    this should only push out to hgwbeta, does not need to push to the RR, that is cluster admin territory refs #35575
• src/hg/utils/otto/genArk/pushRR/alphaBetaPush.pl
  • lines changed 1, context: html, text, full: html, text
    40f327f41b260347654737699c6bd001172a32cd Tue Oct 21 10:56:59 2025 -0700
    this should only push out to hgwbeta and hgw0, does not need to push to the RR, that is cluster admin territory refs #35575
  • lines changed 6, context: html, text, full: html, text
    17859fc49832ff3dc8144ea2ca5f59250050fb03 Tue Oct 21 14:03:04 2025 -0700
    indicate where these scripts come from in the source tree refs #35575
  • lines changed 196, context: html, text, full: html, text
    378faee9c90a86c1f2a7dd39cd5e1961a2d10be9 Tue Oct 21 14:09:51 2025 -0700
    eliminate obsolete copies refs #35575
• src/hg/utils/otto/genArk/pushRR/pullHgwdev.sh
  • lines changed 7, context: html, text, full: html, text
    17859fc49832ff3dc8144ea2ca5f59250050fb03 Tue Oct 21 14:03:04 2025 -0700
    indicate where these scripts come from in the source tree refs #35575
• src/hg/utils/otto/genArk/pushRR/pushRR.sh
  • lines changed 7, context: html, text, full: html, text
    17859fc49832ff3dc8144ea2ca5f59250050fb03 Tue Oct 21 14:03:04 2025 -0700
    indicate where these scripts come from in the source tree refs #35575
  • lines changed 2, context: html, text, full: html, text
    4dcf108ba99ec6add9214f7e36b2041b2f950388 Tue Oct 21 14:07:59 2025 -0700
    indicate this is the obsolete copy refs #35575
  • lines changed 42, context: html, text, full: html, text
    378faee9c90a86c1f2a7dd39cd5e1961a2d10be9 Tue Oct 21 14:09:51 2025 -0700
    eliminate obsolete copies refs #35575
• src/hg/utils/otto/genArk/quickLiftNew.sh
  • lines changed 10, context: html, text, full: html, text
    3f93380b226036b64a4f43c0cae6701109e04c1d Thu Oct 23 11:56:14 2025 -0700
    sorting the file listings so everything is the same everywhere and making up the push list for admin rsync cron scripts
• src/hg/utils/otto/genArk/quickPush.pl
  • lines changed 1, context: html, text, full: html, text
    a2224a3ff403b1fb2da3f74dbbf4cb9e39471781 Tue Oct 21 10:43:09 2025 -0700
    this should only push out to hgwbeta and hgw0, does not need to push to the RR, that is cluster admin territory refs #35575
• src/hg/utils/otto/genArk/whatIsNew.sh
  • lines changed 10, context: html, text, full: html, text
    3f93380b226036b64a4f43c0cae6701109e04c1d Thu Oct 23 11:56:14 2025 -0700
    sorting the file listings so everything is the same everywhere and making up the push list for admin rsync cron scripts
• src/hg/utils/otto/otto.crontab
  • lines changed 4, context: html, text, full: html, text
    7de6bab0b6434d0bb23ab7e78227063fd4e12af9 Thu Oct 23 12:07:30 2025 -0700
    readjust the timing of the devList.sh script compared to the pushRR.sh script