Commits for hiram

v490_preview to v490_preview2 (2025-10-20 to 2025-10-27) v490

8f6315dbca0175c9de974e7d4a9baa8fb040583e Tue Oct 21 10:38:44 2025 -0700

• this should only push out to hgwbeta, does not need to push to the RR, that is cluster admin territory refs #35575
  • src/hg/utils/otto/genArk/pushNewOnes.sh - lines changed 5, context: html, text, full: html, text

8d9d8756a819939ab5546289d7722489fbdab44c Tue Oct 21 10:42:12 2025 -0700

• this should only push out to hgwbeta and hgw0, does not need to push to the RR, that is cluster admin territory refs #35575
  • src/hg/utils/otto/genArk/alphaBetaPush.pl - lines changed 1, context: html, text, full: html, text

a2224a3ff403b1fb2da3f74dbbf4cb9e39471781 Tue Oct 21 10:43:09 2025 -0700

• this should only push out to hgwbeta and hgw0, does not need to push to the RR, that is cluster admin territory refs #35575
  • src/hg/utils/otto/genArk/quickPush.pl - lines changed 1, context: html, text, full: html, text

40f327f41b260347654737699c6bd001172a32cd Tue Oct 21 10:56:59 2025 -0700

• this should only push out to hgwbeta and hgw0, does not need to push to the RR, that is cluster admin territory refs #35575
  • src/hg/utils/otto/genArk/pushRR/alphaBetaPush.pl - lines changed 1, context: html, text, full: html, text

22cbda5e72a0c4429edad0eb3a8545ca0abe1b7c Tue Oct 21 10:59:15 2025 -0700

• obsolete copy of this script refs #35575
  • src/hg/utils/otto/genArk/alphaBetaPush.pl - lines changed 190, context: html, text, full: html, text

17859fc49832ff3dc8144ea2ca5f59250050fb03 Tue Oct 21 14:03:04 2025 -0700

• indicate where these scripts come from in the source tree refs #35575
  • src/hg/utils/otto/genArk/pushRR/alphaBetaPush.pl - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/pushRR/pullHgwdev.sh - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/pushRR/pushRR.sh - lines changed 7, context: html, text, full: html, text

4dcf108ba99ec6add9214f7e36b2041b2f950388 Tue Oct 21 14:07:59 2025 -0700

• indicate this is the obsolete copy refs #35575
  • src/hg/utils/otto/genArk/pushRR/pushRR.sh - lines changed 2, context: html, text, full: html, text

378faee9c90a86c1f2a7dd39cd5e1961a2d10be9 Tue Oct 21 14:09:51 2025 -0700

• eliminate obsolete copies refs #35575
  • src/hg/utils/otto/genArk/pushRR/alphaBetaPush.pl - lines changed 196, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/pushRR/pushRR.sh - lines changed 42, context: html, text, full: html, text

e01e278779d39155f4a30916f45faa9828948610 Wed Oct 22 13:18:54 2025 -0700

• turn off the apache log recording for findGenome results no redmine
  • src/hg/hubApi/findGenome.c - lines changed 5, context: html, text, full: html, text

3f93380b226036b64a4f43c0cae6701109e04c1d Thu Oct 23 11:56:14 2025 -0700

• sorting the file listings so everything is the same everywhere and making up the push list for admin rsync cron scripts
  • src/hg/utils/otto/genArk/devList.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/gbDbGenArkList.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/quickLiftNew.sh - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/otto/genArk/whatIsNew.sh - lines changed 10, context: html, text, full: html, text

7de6bab0b6434d0bb23ab7e78227063fd4e12af9 Thu Oct 23 12:07:30 2025 -0700

• readjust the timing of the devList.sh script compared to the pushRR.sh script
  • src/hg/utils/otto/otto.crontab - lines changed 4, context: html, text, full: html, text

3eda4bcc9f4d46c9d261f669272765dd7b4e657a Thu Oct 23 12:11:46 2025 -0700

• not new push procedure from hgwdev to only hgwbeta
  • src/hg/utils/otto/genArk/README - lines changed 8, context: html, text, full: html, text

2dc78bc27b010545f6af079b46fe1b94b472e90d Mon Oct 27 12:43:42 2025 -0700

• fixup error in help message for fileServer refs #35575
  • src/hg/utils/automation/HgAutomate.pm - lines changed 4, context: html, text, full: html, text

c71e68a92e5d8d8393e7883f8dee5d9695ae7373 Mon Oct 27 12:45:05 2025 -0700

• ram size only needs to be 3Gb and create the quick.lift files still needs the addQuickLift.py addition refs #35575
  • src/hg/utils/automation/doSameSpeciesLiftOver.pl - lines changed 17, context: html, text, full: html, text

a7ecad52c1043982f9fb7818f753fd419d587e51 Mon Oct 27 12:46:14 2025 -0700

• add the addQuickLift.py to the scripts directory refs #35575
  • src/hg/utils/automation/makefile - lines changed 1, context: html, text, full: html, text