Commits for gperez2

v492_base to v493_preview (2025-12-15 to 2026-01-12) v493

81789ef504369535518ea38e0cfd122ea339767b Mon Dec 15 22:07:17 2025 -0800

• Updating test due to a change in a HGVS search, refs #36201
  • src/utils/qa/qaTestScript.py - lines changed 1, context: html, text, full: html, text

fbe00baffdd77e3280b684b54757de7090cf21e9 Tue Dec 16 16:37:41 2025 -0800

• Updating the EVA SNP track description, adding pennantIcon, and adding beta tag, refs #36512
  • src/hg/makeDb/trackDb/evaSnp.alpha.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/evaSnpContainer.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

482cc4cb3426acbc68d9410a92988729f0928c18 Fri Dec 19 13:55:57 2025 -0800

• Releasing the EVA Release 8 tracks, refs #36512
  • src/hg/makeDb/trackDb/evaSnp.alpha.ra - lines changed 157, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/evaSnp.ra - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

73c100526aa0bad1111e65bc746734dc3b859796 Mon Dec 22 14:45:20 2025 -0800

• Releasing and announcing the EVA Release 8 tracks, refs #36512
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 150, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

3c1e958a16b6d79f859d0f51368d767acce0457c Wed Jan 7 19:49:26 2026 -0800

• Added some text and chromAlias/chromAuthority link to help pages, refs #33014
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStart.html - lines changed 7, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html - lines changed 6, context: html, text, full: html, text

fd5b9c605c39c5b83b630926419897d9dbd69c37 Fri Jan 9 14:22:19 2026 -0800

• Adding to the makedoc, the gnomAD v4.1 CNV track update with the gnomad.v4.1.cnv.all.bed data. Also, updated the hgdownload URL in the track description, refs #36837
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html - lines changed 1, context: html, text, full: html, text

dd05936cd30e6438d5085146d9d843047739f63e Fri Jan 9 16:00:19 2026 -0800

• Updating and adding extraIndex and searchIndex documentation to the track hubs help page, refs #19337
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 10, context: html, text, full: html, text

f06a9447a309d1f7084c87f0d65290a0fba435d9 Sat Jan 10 17:34:05 2026 -0800

• Updating the doc to say that mean+whiskers is the default for windowingFunction, refs #27966
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 6, context: html, text, full: html, text