Commits for chmalee

v494_preview to v494_preview2 (2026-02-12 to 2026-02-09) v494

27c103ab1324fd5d181b3e82f7ef3364c9f30e1c Mon Feb 2 11:55:02 2026 -0800

• Restore react bundle makefile no-op on mirrors. We provide the bundled file anyways, refs Michael Hiller email
  • src/hg/js/react/lib/makefile - lines changed 2, context: html, text, full: html, text

96fc33fbab1157d099263deacc579633a044f853 Tue Feb 3 13:24:58 2026 -0800

• Adding an info icon to the new species search bar indicating the various operators that can be applied to search words, refs Hiram email
  • src/hg/lib/web.c - lines changed 9, context: html, text, full: html, text

151f0489b9e4fa73bdc22226a7a6354a450fecb2 Wed Feb 4 11:28:20 2026 -0800

• Hide species tree by default but put up a link to show it again. Don't put connected assembly hubs into the species tree, instead into their own card section like the recent genomes list, below the recents. refs #34078
  • src/hg/hgGateway/hgGateway.html - lines changed 15, context: html, text, full: html, text
  • src/hg/htdocs/style/jWest.css - lines changed 2, context: html, text, full: html, text
  • src/hg/js/hgGateway.js - lines changed 91, context: html, text, full: html, text

2ef9156ca98f85bdfd4bc2cc5c48659a042fdca2 Wed Feb 4 11:59:11 2026 -0800

• Fix typos from code review, refs #37053
  • src/hg/hgLiftOver/hgLiftOver.c - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text

456d9958e98e87dcd02185876ad245964ffefa2a Wed Feb 4 12:26:45 2026 -0800

• faceted bar charts include their own jquery lib for some reason and when we strip script tags to do hgc popups we didn't catch this one, refs #37014
  • src/hg/js/utils.js - lines changed 2, context: html, text, full: html, text

c33fb727d29ae43ba03df3c1612990a03224f1ca Wed Feb 4 12:59:28 2026 -0800

• OR together top level track with subtrack level vis when calculating visible tracks. Otherwise our particular values for squish vs pack cause problems when ANDing togethe visibilities, refs #36609
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

892ed11dc23adf5ebc35babd5e62993778f3e4b7 Thu Feb 5 10:18:34 2026 -0800

• Add some documentation to hgCustom indicating we have hubspace now, refs #37013
  • src/hg/hgCustom/hgCustom.c - lines changed 6, context: html, text, full: html, text

087d1f625866a7716ee70496c8ba95053ee3fbfa Thu Feb 5 11:27:59 2026 -0800

• Make the user confirm they actually want to disconnect from a track hub on hgTracks as the button is right next to the refresh button, refs #36704
  • src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text