File Changes for max

v495_preview2 to v495_base (2026-03-02 to 2026-03-09) v495

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 5, context: html, text, full: html, text
    a3244b1059b27424713c97be5694c716d1b90172 Thu Mar 5 11:36:07 2026 -0800
    fixing bug in supertrack UI that appears when the track name has a dot in it, refs #36917, also uppercasing the visibilities, refs #37200
• src/hg/js/subCfg.js
  • lines changed 3, context: html, text, full: html, text
    a3244b1059b27424713c97be5694c716d1b90172 Thu Mar 5 11:36:07 2026 -0800
    fixing bug in supertrack UI that appears when the track name has a dot in it, refs #36917, also uppercasing the visibilities, refs #37200
  • lines changed 3, context: html, text, full: html, text
    c105602024944ec42576736467fcddd7337367d0 Thu Mar 5 15:38:05 2026 -0800
    fixing composite upcasing, refs #37200
• src/hg/lib/hui.c
  • lines changed 5, context: html, text, full: html, text
    a3244b1059b27424713c97be5694c716d1b90172 Thu Mar 5 11:36:07 2026 -0800
    fixing bug in supertrack UI that appears when the track name has a dot in it, refs #36917, also uppercasing the visibilities, refs #37200
  • lines changed 1, context: html, text, full: html, text
    3df73adf84cf0ecfbe9310c21682034c5e6ad7cc Sat Mar 7 09:47:33 2026 -0800
    Default polyA tail detection to off for BAM/CRAM tracks. The polyA detection was designed for mRNA/EST alignments and produces misleading asymmetric coloring on BAM reads due to strand-dependent checks in baseColorOverdrawQInsert. Users who need it for long-read cDNA/RNA sequencing can still enable it via the checkbox in hgTrackUi. refs #37133 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 4, context: html, text, full: html, text
    5ecc240ed4c5b14d77c5903eefbff0c57b5f2135 Wed Mar 4 14:17:49 2026 -0800
    fixes after code review, refs #37195
• src/lib/cheapcgi.c
  • lines changed 3, context: html, text, full: html, text
    a3244b1059b27424713c97be5694c716d1b90172 Thu Mar 5 11:36:07 2026 -0800
    fixing bug in supertrack UI that appears when the track name has a dot in it, refs #36917, also uppercasing the visibilities, refs #37200