Commits for max

v495_preview2 to v495_base (2026-03-02 to 2026-03-09) v495

5ecc240ed4c5b14d77c5903eefbff0c57b5f2135 Wed Mar 4 14:17:49 2026 -0800

• fixes after code review, refs #37195
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 4, context: html, text, full: html, text

a3244b1059b27424713c97be5694c716d1b90172 Thu Mar 5 11:36:07 2026 -0800

• fixing bug in supertrack UI that appears when the track name has a dot in it, refs #36917, also uppercasing the visibilities, refs #37200
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 5, context: html, text, full: html, text
  • src/hg/js/subCfg.js - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 5, context: html, text, full: html, text
  • src/lib/cheapcgi.c - lines changed 3, context: html, text, full: html, text

c105602024944ec42576736467fcddd7337367d0 Thu Mar 5 15:38:05 2026 -0800

• fixing composite upcasing, refs #37200
  • src/hg/js/subCfg.js - lines changed 3, context: html, text, full: html, text

3df73adf84cf0ecfbe9310c21682034c5e6ad7cc Sat Mar 7 09:47:33 2026 -0800

• Default polyA tail detection to off for BAM/CRAM tracks. The polyA detection was designed for mRNA/EST alignments and produces misleading asymmetric coloring on BAM reads due to strand-dependent checks in baseColorOverdrawQInsert. Users who need it for long-read cDNA/RNA sequencing can still enable it via the checkbox in hgTrackUi. refs #37133 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text