Commits for markd

v497_base to v498_preview (2026-04-20 to 2026-04-27) v498

abc896118b1b7aaf66ff3ade939f34edf49ac97a Thu Apr 23 13:56:57 2026 -0700

• switch gencode all,joiner to use macros instead of growing every release #37436
  • src/hg/lib/joiner.c - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 8257, context: html, text, full: html, text

b6aee4c6471cddebd638fec8dbb988c29a69bc22 Thu Apr 23 21:58:41 2026 -0700

• import of GENCODE V50, MV39, and V50lift37; added a command to do import with a single command
  • src/hg/makeDb/doc/hg19.gencode.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/gencode.txt - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm39/gencode.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/buildGencodeToUcscLift - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeBackMapMetadataIds - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeBuildRelease - lines changed 274, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeExonSupportToTable - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeGenerateTrackDbs - lines changed 128, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeGxfToAttrs - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeGxfToGenePred - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeJoinerCheck - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeMakeAttrs - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeMakeTracks - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodePolyaGxfToGenePred - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 80, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/lib/gencode/gencodeTags.py - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV50lift37.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV50lift37.ra - lines changed 210, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV50.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV50.ra - lines changed 247, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM39.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM39.ra - lines changed 247, context: html, text, full: html, text