Commits for jnavarr5

1c74bbe38be86c61ba4d1ffae3b020e4905d5a3d Wed Apr 29 09:02:56 2026 -0700

Updating the git crontab to match the one running on /hive, no Redmine.
- src/hg/utils/otto/otto.crontab - lines changed 1, context: html, text, full: html, text

bfc0ac4ea2f3cc169bac73afc6511c07dd802a20 Wed Apr 29 14:41:53 2026 -0700

Resolve OUP article-lookup links to canonical URLs in BAC track refs. refs #35059 bacRearray32k.html: Krzywinski 2004 NAR -> /nar/article/32/12/3651/2375827 choriCloneEnds.html: Schneider 2013 NAR -> /nar/article/41/D1/D1070/1065498 Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- src/hg/makeDb/trackDb/human/hg38/bacRearray32k.html - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/danRer11/choriCloneEnds.html - lines changed 1, context: html, text, full: html, text

a9d4e09a91905f56c4e2c8945a8d7855985a1751 Wed Apr 29 14:43:43 2026 -0700

Forgot a semicolon, no Redmine.
- src/hg/utils/otto/otto.crontab - lines changed 1, context: html, text, full: html, text

62814c7ee2bdfc27396d071877245867d216f5ef Wed Apr 29 14:43:58 2026 -0700

choriCloneEnds.html: replace nbsp entities with regular spaces in bigBedToBed example. refs #35059 The example previously used   between command-line flags, which renders fine visually but copies as literal U+00A0 bytes that break the shell command on paste. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- src/hg/makeDb/trackDb/zebrafish/danRer11/choriCloneEnds.html - lines changed 1, context: html, text, full: html, text

0f3d178cd9ea79da9e5bb42576ec57a441c41809 Wed Apr 29 14:51:31 2026 -0700

bacEndPairsLift.html: modernize HTML, add Data Access section, fix Children's. refs #35059 Lowercase all tags and quote target="_blank" attributes per qa-html standards. Add a standard Data Access section pointing at Table Browser, Data Integrator, REST API, and the hgdownload bigBed file. Fix "Childrens Hospital" -> "Children's Hospital". Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- src/hg/makeDb/trackDb/zebrafish/danRer11/bacEndPairsLift.html - lines changed 75, context: html, text, full: html, text

5c12c955bfbf5428bfe5f0932df7c16110020d28 Wed Apr 29 16:31:03 2026 -0700

Moving the new track to next to the other Chori track. Chaning the priority so they are grouped together on the UI page, refs #35059
- src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra - lines changed 22, context: html, text, full: html, text

23a1d303af11df08a568807aa65c21d973b4fc1a Wed Apr 29 16:32:15 2026 -0700

Fixing the table layout, refs #35059
- src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 3, context: html, text, full: html, text

b7c9630cddfbbbf5d858d4d0bb27caf572593089 Wed Apr 29 16:47:22 2026 -0700

Adding a relatedTracks setting for the BAC tracks for danRer11, refs #35059
- src/hg/makeDb/trackDb/relatedTracks.ra - lines changed 4, context: html, text, full: html, text

db75ac2f74d3149efdb945d1efe966b27ec0def8 Thu Apr 30 15:39:17 2026 -0700

Adding a note about Pieter de Jong's contribution to the BAC tracks, refs #35059
- src/hg/makeDb/trackDb/human/cloneEndSuper.html - lines changed 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/bacRearray32k.html - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/danRer11/choriCloneEnds.html - lines changed 4, context: html, text, full: html, text

e7d9f3a014feecf76330d77a797d5ea6eaf93a0f Thu Apr 30 16:10:41 2026 -0700

Staging the BAC tracks on the RR, refs #35059
- src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra - lines changed 1, context: html, text, full: html, text