File Changes for chmalee

v499_preview to v499_preview2 (2026-05-18 to 2026-05-25) v499

• src/hg/hgCustom/hgCustom.c
  • lines changed 1, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTables/bedList.c
  • lines changed 3, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTables/custom.c
  • lines changed 4, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTables/filterFields.c
  • lines changed 5, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTables/hgTables.c
  • lines changed 8, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTables/joining.c
  • lines changed 4, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTables/schema.c
  • lines changed 1, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 7, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgTracks/myVariantsTrack.c
  • lines changed 2, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
  • lines changed 54, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/hgTracks/simpleTracks.c
  • lines changed 8, context: html, text, full: html, text
    4c756ae28c7c8a654ba4a8877224f03513999b64 Tue May 19 14:16:27 2026 -0700
    More fixes from code review. Hopefully have cleared the last remaining vestiges of the first version of the tooltip implementation, refs #37528
• src/hg/hgc/hgc.c
  • lines changed 7, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/hgc/myVariantsClick.c
  • lines changed 8, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
  • lines changed 47, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/inc/myVariants.h
  • lines changed 14, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
  • lines changed 16, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/inc/myVariantsShare.h
  • lines changed 6, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/js/hgMyData.js
  • lines changed 48, context: html, text, full: html, text
    e5d2a3ffc3900795526144f1834612cd8c9ddf24 Wed May 20 12:25:29 2026 -0700
    Fix last two remaining bugs from #37411: genome name and hub name should be defaults if you click upload from the hubSpace top level, and should update appropriatly if you select a previously uploaded assembly hub genome from the genome dropdown list, refs #37411
• src/hg/js/hgTracks.js
  • lines changed 1, context: html, text, full: html, text
    4c756ae28c7c8a654ba4a8877224f03513999b64 Tue May 19 14:16:27 2026 -0700
    More fixes from code review. Hopefully have cleared the last remaining vestiges of the first version of the tooltip implementation, refs #37528
  • lines changed 342, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/js/utils.js
  • lines changed 1, context: html, text, full: html, text
    4c756ae28c7c8a654ba4a8877224f03513999b64 Tue May 19 14:16:27 2026 -0700
    More fixes from code review. Hopefully have cleared the last remaining vestiges of the first version of the tooltip implementation, refs #37528
• src/hg/lib/customFactory.c
  • lines changed 4, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/lib/customTrack.c
  • lines changed 2, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/lib/myVariants.as
  • lines changed 2, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/lib/myVariants.c
  • lines changed 32, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
  • lines changed 55, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/lib/myVariants.sql
  • lines changed 2, context: html, text, full: html, text
    ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
    Add cnv type to myVariants, refs #33808
• src/hg/lib/myVariantsShare.c
  • lines changed 40, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/hg/lib/trackDbCustom.c
  • lines changed 2, context: html, text, full: html, text
    ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
    myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
• src/utils/hubtools/hubtools
  • lines changed 72, context: html, text, full: html, text
    cc99fd8cda2d90b8f6fd95b2f926fc19704d0a90 Fri May 22 13:33:25 2026 -0700
    hubtools: fix upload to match hubspace hooks, add to user-apps, refs #36790 Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
• src/utils/makefile
  • lines changed 2, context: html, text, full: html, text
    cc99fd8cda2d90b8f6fd95b2f926fc19704d0a90 Fri May 22 13:33:25 2026 -0700
    hubtools: fix upload to match hubspace hooks, add to user-apps, refs #36790 Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>