Commits for chmalee
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v499_preview to v499_preview2 (2026-05-18 to 2026-05-25) v499
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ba33f2c600399d5b4b97dd5fd987ed2db3c891ba Tue May 19 13:40:42 2026 -0700
- myVariants related fixes from code review. Standardize how the code determines we are about to do something myVariants related by #defining some strings and using sameOk to check for them, remove a dead code block, and have hgc use autoSql to load the myVariants item rather than check the raw sql result, refs #37528
- src/hg/hgCustom/hgCustom.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTables/bedList.c - lines changed 3, context: html, text, full: html, text
- src/hg/hgTables/custom.c - lines changed 4, context: html, text, full: html, text
- src/hg/hgTables/filterFields.c - lines changed 5, context: html, text, full: html, text
- src/hg/hgTables/hgTables.c - lines changed 8, context: html, text, full: html, text
- src/hg/hgTables/joining.c - lines changed 4, context: html, text, full: html, text
- src/hg/hgTables/schema.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 7, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/myVariantsTrack.c - lines changed 2, context: html, text, full: html, text
- src/hg/hgc/myVariantsClick.c - lines changed 8, context: html, text, full: html, text
- src/hg/inc/myVariants.h - lines changed 14, context: html, text, full: html, text
- src/hg/inc/myVariantsShare.h - lines changed 6, context: html, text, full: html, text
- src/hg/lib/customFactory.c - lines changed 4, context: html, text, full: html, text
- src/hg/lib/customTrack.c - lines changed 2, context: html, text, full: html, text
- src/hg/lib/myVariants.c - lines changed 32, context: html, text, full: html, text
- src/hg/lib/myVariantsShare.c - lines changed 40, context: html, text, full: html, text
- src/hg/lib/trackDbCustom.c - lines changed 2, context: html, text, full: html, text
4c756ae28c7c8a654ba4a8877224f03513999b64 Tue May 19 14:16:27 2026 -0700
- More fixes from code review. Hopefully have cleared the last remaining vestiges of the first version of the tooltip implementation, refs #37528
- src/hg/hgTracks/simpleTracks.c - lines changed 8, context: html, text, full: html, text
e5d2a3ffc3900795526144f1834612cd8c9ddf24 Wed May 20 12:25:29 2026 -0700
- Fix last two remaining bugs from #37411: genome name and hub name should be defaults if you click upload from the hubSpace top level, and should update appropriatly if you select a previously uploaded assembly hub genome from the genome dropdown list, refs #37411
ef4a5ad1ea45eda4fde693f56f2106c553e87d93 Wed May 20 15:24:30 2026 -0700
- Add cnv type to myVariants, refs #33808
- src/hg/hgTracks/myVariantsTrack.c - lines changed 54, context: html, text, full: html, text
- src/hg/hgc/myVariantsClick.c - lines changed 47, context: html, text, full: html, text
- src/hg/inc/myVariants.h - lines changed 16, context: html, text, full: html, text
- src/hg/js/hgTracks.js - lines changed 342, context: html, text, full: html, text
- src/hg/lib/myVariants.as - lines changed 2, context: html, text, full: html, text
- src/hg/lib/myVariants.c - lines changed 55, context: html, text, full: html, text
- src/hg/lib/myVariants.sql - lines changed 2, context: html, text, full: html, text
e099e83f2e93815bf96b0d523fc19fdb387576be Thu May 21 10:38:28 2026 -0700
- Merge branch 'addCnvsToMyVariants'
cc99fd8cda2d90b8f6fd95b2f926fc19704d0a90 Fri May 22 13:33:25 2026 -0700
- hubtools: fix upload to match hubspace hooks, add to user-apps, refs #36790
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- src/utils/hubtools/hubtools - lines changed 72, context: html, text, full: html, text
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