Commits for jnavarr5

v503_preview2 to v503_base (2026-08-24 to 2026-08-31) v503

dad2b237d480ba64706fbb6c63d092b2738a2413 Mon Aug 24 15:33:38 2026 -0700

• Add ### headings as indented TOC sub-items and fix docs sidebar highlighting, refs #36320
  • docs/staticPage.html - lines changed 63, context: html, text, full: html, text
  • docs/staticPage.lua - lines changed 10, context: html, text, full: html, text
  • src/hg/htdocs/staticStyle/gbStatic.css - lines changed 6, context: html, text, full: html, text

047ccb47a7fc8dd0d1aaa461fc170ebc34305bb7 Mon Aug 24 15:33:38 2026 -0700

• Add Faceted Composite Tracks doc page covering trackDb settings and metadata file, refs #36320
  • docs/hubs/facetedComposite.md - lines changed 432, context: html, text, full: html, text

c59bd36405b9130e30e25de6d37911298154322e Mon Aug 24 15:38:35 2026 -0700

• Replace the goldenPath faceted composite help page with the new docs page and link it, refs #36320
  • docs/index.md - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/facetedComposite.html - lines changed 428, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 1, context: html, text, full: html, text

e3c1ec4c7bcd63fc192134ffcb6b7db49f9da729 Tue Aug 25 14:04:10 2026 -0700

• Replace vague here links in the trackDb library with link text naming each destination page. No RM.
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 5, context: html, text, full: html, text

79ef45749671d72edb96b09fc6a56d8af0837e5a Tue Aug 25 16:10:48 2026 -0700

• Remove cirmdcm.soe.ucsc.edu from the checkHTTPS site certificate expiration check. No RM. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
  • src/utils/qa/checkHTTPS - lines changed 1, context: html, text, full: html, text

e97d61e4e25c4c10fc6a4b74ede6f10923983618 Thu Aug 27 16:45:31 2026 -0700

• Releasing the EVE and popEVE tracks for hg38, refs #37763 #37791
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.ra - lines changed 2, context: html, text, full: html, text

1f5afdd131d8f41f9dead82d52cb5a723e443437 Fri Aug 28 15:25:59 2026 -0700

• Announcing the EVE and popEVE tracks for hg38, refs #37791 #37763
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 120, context: html, text, full: html, text
  • src/hg/htdocs/images/newsArchImages/eve.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/images/newsArchImages/popEve.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/eve.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/popEve.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.ra - lines changed 1, context: html, text, full: html, text

085e756cd661df666ac2d9e1ff477363b709449a Fri Aug 28 15:43:25 2026 -0700

• Updating git to match the crontab running on /hive, no Redmine
  • src/hg/utils/otto/otto.crontab - lines changed 3, context: html, text, full: html, text

6886101fd2d0574daca5c9ce962a0de70ef61b19 Fri Aug 28 15:53:29 2026 -0700

• Implementing Lou's feedback from code review, refs #38177
  • src/hg/utils/otto/ottoCompareGitVsHiveFiles.py - lines changed 27, context: html, text, full: html, text