Commits for braney

v490_preview2 to v490_base (2025-10-27 to 2025-11-03) v490

4d80894351b62c4daa432279691a9ef73717d86b Wed Oct 29 08:57:35 2025 -0700

• allow mafGene to use bigMaf and twoBit instead of database
  • src/hg/inc/mafGene.h - lines changed 13, context: html, text, full: html, text
  • src/hg/lib/mafGene.c - lines changed 68, context: html, text, full: html, text
  • src/hg/ratStuff/mafGene/mafGene.c - lines changed 25, context: html, text, full: html, text

ff70fc9c934dd856c7ba5c723f2cdcc3568ad09e Mon Nov 3 15:20:19 2025 -0800

• one path for bigBed, bigPs, bigGenePred, bigDbSNp. refs #19984
  • src/hg/hgTracks/bigBedTrack.c - lines changed 31, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 8, context: html, text, full: html, text

cd6fddde0007623ebbc749201b748dfa24c47b91 Mon Nov 3 15:23:58 2025 -0800

• Revert "one path for bigBed, bigPs, bigGenePred, bigDbSNp. refs #19984" This reverts commit ff70fc9c934dd856c7ba5c723f2cdcc3568ad09e.
  • src/hg/hgTracks/bigBedTrack.c - lines changed 31, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 8, context: html, text, full: html, text