Commits for max

v490_preview2 to v490_base (2025-10-27 to 2025-11-03) v490

807acfef611a3ec3b523d1b409c8fa799a034d7e Tue Oct 28 08:49:59 2025 -0700

• refresh page right away when hide group is clicked, refs #36354
  • src/hg/js/hgTracks.js - lines changed 2, context: html, text, full: html, text

ee8b9b26531c6606398b89ef86aa72469ab92bd5 Tue Oct 28 09:29:27 2025 -0700

• adding new info icon to group and making the hide group button do a refresh, refs #36610
  • src/hg/hgTracks/hgTracks.c - lines changed 23, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 19, context: html, text, full: html, text

850b9b7d97d7a0fc1ea8f5357132b95aba4dda37 Tue Oct 28 14:30:19 2025 -0700

• forgot to commit a file in last commit
  • src/hg/inc/bigBedFilter.h - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text

46fb9137d79ec3fafc731fbf896e5accd47fa53d Tue Oct 28 14:32:23 2025 -0700

• accidentally committed a value in the previous commit, taking that back
  • src/hg/inc/bigBedFilter.h - lines changed 1, context: html, text, full: html, text

6a7655f06c1581853f1a028eb29e17caecfba6a0 Wed Oct 29 07:26:54 2025 -0700

• adding RNA modifications superTrack, refs #36613
  • src/hg/makeDb/trackDb/human/hg38/rnaMod.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/rnaMod.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

80732564dd5c43725740eaa0c39760e3c89507af Wed Oct 29 07:53:00 2025 -0700

• fixing null exception, refs #36610
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

39795df20ecc6043b12a9a8aa9c08660a1571bd0 Thu Oct 30 03:49:31 2025 -0700

• fixing hgBlat error when using apiKey, refs #36428
  • src/hg/lib/hdb.c - lines changed 4, context: html, text, full: html, text

2eb76dc0d29bb19615c354880a3a58830664b05d Thu Oct 30 07:16:23 2025 -0700

• adding MCPS Mexico city variants, refs #36628
  • src/hg/makeDb/trackDb/human/hg38/varFreqs.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/varFreqs.ra - lines changed 10, context: html, text, full: html, text

708f8ae536c8b06b97d7f60ae5fb816c806a0caa Thu Oct 30 07:17:03 2025 -0700

• typo in previous commit
  • src/hg/makeDb/trackDb/human/hg38/varFreqs.ra - lines changed 1, context: html, text, full: html, text

6f8c0b12e680d6205ed80331ef89fa686f710195 Thu Oct 30 16:36:55 2025 -0700

• small group bar fix, refs #36610
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

848a8115f69b649893ca9af7b6a689d99c4dd0a8 Fri Oct 31 01:52:08 2025 -0700

• trying to install special rhel repos, no ticket yet, ML from Susanne Kandolf
  • src/product/installer/browserSetup.sh - lines changed 113, context: html, text, full: html, text

9ec8ecc35be16510fa842e1c47f9e821d0e90f0f Fri Oct 31 02:30:41 2025 -0700

• adding a few suggested changes from Galaxy, see https://github.com/bioconda/bioconda-recipes/blob/master/recipes/ucsc-mafgene/0001-include.patch, no redmine
  • src/hg/lib/straw/makefile - lines changed 2, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed - lines changed 11, context: html, text, full: html, text

030cc7d4165ee6b37bd4c9ecfb443fb39ac2468d Mon Nov 3 07:59:26 2025 -0800

• updating mexico biobank track, and related tracks, refs #36259
  • src/hg/makeDb/trackDb/human/hg38/topmed.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/varFreqs.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 49, context: html, text, full: html, text
  • src/inc/common.mk - lines changed 1, context: html, text, full: html, text

ae63ce55185746c5fabb2ead8cc20215faada36d Mon Nov 3 08:03:14 2025 -0800

• adding ancient dna track, refs #36592
  • src/hg/hgBlat/hgBlat.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGateway/hgGateway.html - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 13, context: html, text, full: html, text
  • src/hg/hgTracks/mainMain.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 17, context: html, text, full: html, text
  • src/hg/htdocs/style/autocomplete.css - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hgConfig.h - lines changed 3, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 13, context: html, text, full: html, text
  • src/hg/js/subCfg.js - lines changed 18, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/hgConfig.c - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/hgLoadMaf/hgLoadMafSummary.c - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/bayesDel.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/ancient.ra - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/encode3.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/panelApp/updatePanelApp - lines changed 6, context: html, text, full: html, text
  • src/lib/common.c - lines changed 10, context: html, text, full: html, text

b36aef93464d21c304c09a9a301c56f7d051be96 Mon Nov 3 13:41:45 2025 -0800

• filtering ancient VCF files, refs #36592
  • src/hg/makeDb/trackDb/human/hg38/ancient.html - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/ancient.ra - lines changed 4, context: html, text, full: html, text

80165cbc77565f3c2bdfc9acce4fe66d0f02ad55 Mon Nov 3 13:58:56 2025 -0800

• adding make doc for ancient track, refs #36592
  • src/hg/makeDb/doc/hg38/ancient.txt - lines changed 15, context: html, text, full: html, text

da8d0706020df39b6c2cc5b5dacb22a5e7242462 Mon Nov 3 13:59:26 2025 -0800

• track doc for ancient track, refs #36592
  • src/hg/makeDb/trackDb/human/hg38/ancient.html - lines changed 1, context: html, text, full: html, text