Commits for max

c3650b1ed157f95f90b5c486464d0fa430d13a99 Wed Jun 17 06:11:52 2026 -0700

improved complement feature text, refs #37779
- src/hg/hgTracks/hgTracks.c - lines changed 15, context: html, text, full: html, text

533cc89eb4febc78c9f8f104aed4523de06bf85b Fri Jun 19 08:58:02 2026 -0700

varFreqs: fix numeric filter rendering and trim per-cohort filters #Preview2 week - bugs introduced now will need a build patch to fix The Affected/Background track config pages showed none of the AF/AC/AN filters. hgTrackUi only discovers a numeric filter from a filter.<field> (or <field>Filter) setting (FILTER_NUMBER_WILDCARD in bigBedFilter.h); the generated fragment had only filterByRange.<field>/filterLimits.<field> for those fields, so they were silently dropped. vcfToBigBed.py now emits filter.<field> (a full-range default, so nothing is filtered by default) plus filterLimits for every numeric filter. That made ~140 filters appear, which overwhelmed the config page, so the per-database and per-population AF/AC filters are emitted commented out (range_filter enabled=False) and can be re-enabled individually by removing the leading "# ". Only the global filters remain active: variant type, consequence, the affected/case and background AF/AC/AN summaries, the affected/case-cohort and background-source selectors, the in-affected flag, and the length filters. The per-cohort data columns are unchanged in the bigBed and still show on the details page. No bigBed rebuild needed; this is trackDb-only. refs #36642
- src/hg/makeDb/scripts/varFreqs/vcfToBigBed.py - lines changed 63, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 1098, context: html, text, full: html, text