Commits for hiram

v483_base to v484_preview (2025-06-09 to 2025-06-16) v484

d08295645530efa8f0499aeb90c99bbd148d1f81 Mon Jun 9 14:14:09 2025 -0700

• catching up to BRC project list refs #34337
  • src/hg/makeDb/doc/brcAsmHub/brc.orderList.tsv - lines changed 1, context: html, text, full: html, text

09ef85ca632c16e69f78df3c0c0c3341cfe47fee Tue Jun 10 12:05:17 2025 -0700

• adding on per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 1, context: html, text, full: html, text

031ecd610e5aedea24a47b593927a304928c2172 Tue Jun 10 15:00:40 2025 -0700

• adding two for the BRC project 34337
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 2, context: html, text, full: html, text

8eee5585408be4638d72c8edc91d10cde921c3ff Wed Jun 11 15:06:14 2025 -0700

• catching up to BRC project list refs #34337
  • src/hg/makeDb/doc/brcAsmHub/brc.orderList.tsv - lines changed 3, context: html, text, full: html, text

acdf4cc28a8651e554426c493d06380e2bacf895 Wed Jun 11 17:04:29 2025 -0700

• adding updated HPRC assemblies and a user request refs #35415
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 71, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 69, context: html, text, full: html, text

bab676a6dc1396b8c361770f3dea490fb91243d1 Sun Jun 15 09:57:26 2025 -0700

• do not make symlinks in /gbdb/GCx_.../...
  • src/hg/utils/automation/doRecipBest.pl - lines changed 4, context: html, text, full: html, text

4e5154cb7b0faf1d16fadc3ec9f14018c8aa7bd2 Mon Jun 16 10:58:41 2025 -0700

• clade menu was not working refs #35863
  • src/hg/hgCustom/hgCustom.c - lines changed 1, context: html, text, full: html, text

d055acf1b67fcd434c4c7e2ddec719b35aba9390 Mon Jun 16 11:02:17 2025 -0700

• add one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 13, context: html, text, full: html, text

7000bc69be5351f65c48d434bcc477b8d6d7cc05 Mon Jun 16 20:26:59 2025 -0700

• the database trackDb construction does not like the chain net views mixed up they must be the stanza right before their subTracks refs #35898
  • src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 109, context: html, text, full: html, text

3f0c0274dd461da6dc0b76ab564723d0601952aa Mon Jun 16 20:28:59 2025 -0700

• should be delivering asmHubChainNetTrackDb.pl refs #35898
  • src/hg/utils/automation/makefile - lines changed 1, context: html, text, full: html, text

6fe0e58c664dd4f9849fb222de0a82bb5de61c61 Mon Jun 16 20:47:30 2025 -0700

• the database trackDb construction does not like the chain net views mixed up they must be the stanza right before their subTracks refs #35898
  • src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 19, context: html, text, full: html, text