Commits for lrnassar

v484_base to v485_preview (2025-06-30 to 2025-07-07) v485

553f892edf37a754bcf2ae6975be07e8cf8e608d Tue Jul 1 16:28:15 2025 -0700

• Squashing old pennantIcons.
  • src/hg/makeDb/trackDb/human/civic.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/denovoDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceImpactSuper.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/splicevardb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

affd7eec361fd45c52bb5658910e7d4456f421a7 Wed Jul 2 16:23:16 2025 -0700

• Feedback from CR, refs #36014
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

72ecd89a5f2f0f37b07e54e25f4bc3718ab11682 Thu Jul 3 16:54:18 2025 -0700

• Updating the text to reflect the new limitations to hgBlat programmatic access. Refs #36028
  • src/hg/hgBlat/hgBlat.c - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/FAQ/FAQblat.html - lines changed 7, context: html, text, full: html, text

5238bc2c6663f5fdc03e6237c605f7ab6f77e814 Thu Jul 3 17:24:08 2025 -0700

• TrackDb tweaks for release of two new tracks, and clarifying the interpretation of mutscore, refs #35806 #35922
  • src/hg/makeDb/trackDb/human/mcap.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mutscore.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.html - lines changed 6, context: html, text, full: html, text

b3e1b430e5439ca135d95fb540c1d3393a126e2e Thu Jul 3 17:52:58 2025 -0700

• Adding the M-CAP guidelines, refs #35806 #35922
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.html - lines changed 5, context: html, text, full: html, text