kent: changes by file

review to branch (2009-03-17 to 2009-03-31) v203

• src/hg/autoSql/autoSql.c
  • 1.37 lines changed: 47, context: html, text, full: html, text
    Refactoring to move asColumnToSqlType to library.
• src/hg/autoSql/tests/expected/doc.sql
  • 1.2 lines changed: 0, context: html, text, full: html, text
    Updating test set to accommodate a harmless change in white space processing due to refactoring.
• src/hg/autoSql/tests/expected/symTest.sql
  • 1.2 lines changed: 0, context: html, text, full: html, text
    Updating test set to accommodate a harmless change in white space processing due to refactoring.
• src/hg/hgTables/asObj.c
  • 1.3 lines changed: 8, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/bedList.c
  • 1.64 lines changed: 5, context: html, text, full: html, text
    Making a lot more of the bigBed stuff work by implementing bigBedGetFilteredBedsOnRegions.
• src/hg/hgTables/bigBed.c
  • 1.8 lines changed: 51, context: html, text, full: html, text
    Making a lot more of the bigBed stuff work by implementing bigBedGetFilteredBedsOnRegions.
  • 1.7 lines changed: 303, context: html, text, full: html, text
    Getting filters to work on bigBed. Next up - intersections!
  • 1.6 lines changed: 28, context: html, text, full: html, text
    Starting to add filtering. Collects input now, but doesn't actually run filter.
  • 1.5 lines changed: 117, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/bigWig.c
  • 1.4 lines changed: 3, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/custom.c
  • 1.39 lines changed: 129, context: html, text, full: html, text
    Getting filters to work on bigBed. Next up - intersections!
  • 1.38 lines changed: 22, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/filterFields.c
  • 1.68 lines changed: 158, context: html, text, full: html, text
    Getting filters to work on bigBed. Next up - intersections!
  • 1.67 lines changed: 15, context: html, text, full: html, text
    Starting to add filtering. Collects input now, but doesn't actually run filter.
  • 1.66 lines changed: 10, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/hgTables.c
  • 1.180 lines changed: 1, context: html, text, full: html, text
    Getting filters to work on bigBed. Next up - intersections!
  • 1.179 lines changed: 56, context: html, text, full: html, text
    Starting to add filtering. Collects input now, but doesn't actually run filter.
  • 1.177 lines changed: 12, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/hgTables.h
  • 1.133 lines changed: 5, context: html, text, full: html, text
    Making a lot more of the bigBed stuff work by implementing bigBedGetFilteredBedsOnRegions.
  • 1.132 lines changed: 30, context: html, text, full: html, text
    Getting filters to work on bigBed. Next up - intersections!
  • 1.131 lines changed: 24, context: html, text, full: html, text
    Starting to add filtering. Collects input now, but doesn't actually run filter.
  • 1.130 lines changed: 9, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgTables/joining.c
  • 1.53 lines changed: 15, context: html, text, full: html, text
    Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
• src/hg/hgc/bigBedClick.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Adding parameter to bigBedIntervalQuery.
• src/hg/inc/bed.h
  • 1.53 lines changed: 19, context: html, text, full: html, text
    Adding bedFilter family of functions.
• src/hg/lib/bed.c
  • 1.63 lines changed: 101, context: html, text, full: html, text
    Adding bedFilter family of functions.
• src/inc/asParse.h
  • 1.4 lines changed: 3, context: html, text, full: html, text
    Adding asColumnToSqlType
• src/inc/bbiFile.h
  • 1.8 lines changed: 2, context: html, text, full: html, text
    Updating comment.
• src/lib/asParse.c
  • 1.7 lines changed: 31, context: html, text, full: html, text
    Adding asColumnToSqlType