kent: changes by commit

review to branch (2009-03-17 to 2009-03-31) v203

• Adding parameter to bigBedIntervalQuery.
  • src/hg/hgc/bigBedClick.c 1.3 - lines changed: 1, context: html, text, full: html, text
• Simplifying some logic where code was unnecessarily distinguishing between hPrintf and fprintf(stdout - which is an issue in the Genome Browser, but not here in the Table Browser. Also enabling select fields user interface.
  • src/hg/hgTables/asObj.c 1.3 - lines changed: 8, context: html, text, full: html, text
  • src/hg/hgTables/bigBed.c 1.5 - lines changed: 117, context: html, text, full: html, text
  • src/hg/hgTables/bigWig.c 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTables/custom.c 1.38 - lines changed: 22, context: html, text, full: html, text
  • src/hg/hgTables/filterFields.c 1.66 - lines changed: 10, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.c 1.177 - lines changed: 12, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h 1.130 - lines changed: 9, context: html, text, full: html, text
  • src/hg/hgTables/joining.c 1.53 - lines changed: 15, context: html, text, full: html, text
• Adding asColumnToSqlType
  • src/inc/asParse.h 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/lib/asParse.c 1.7 - lines changed: 31, context: html, text, full: html, text
• Updating test set to accommodate a harmless change in white space processing due to refactoring.
  • src/hg/autoSql/tests/expected/doc.sql 1.2 - lines changed: 0, context: html, text, full: html, text
  • src/hg/autoSql/tests/expected/symTest.sql 1.2 - lines changed: 0, context: html, text, full: html, text
• Updating comment.
  • src/inc/bbiFile.h 1.8 - lines changed: 2, context: html, text, full: html, text
• Starting to add filtering. Collects input now, but doesn't actually run filter.
  • src/hg/hgTables/bigBed.c 1.6 - lines changed: 28, context: html, text, full: html, text
  • src/hg/hgTables/filterFields.c 1.67 - lines changed: 15, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.c 1.179 - lines changed: 56, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h 1.131 - lines changed: 24, context: html, text, full: html, text
• Refactoring to move asColumnToSqlType to library.
  • src/hg/autoSql/autoSql.c 1.37 - lines changed: 47, context: html, text, full: html, text
• Adding bedFilter family of functions.
  • src/hg/inc/bed.h 1.53 - lines changed: 19, context: html, text, full: html, text
  • src/hg/lib/bed.c 1.63 - lines changed: 101, context: html, text, full: html, text
• Getting filters to work on bigBed. Next up - intersections!
  • src/hg/hgTables/bigBed.c 1.7 - lines changed: 303, context: html, text, full: html, text
  • src/hg/hgTables/custom.c 1.39 - lines changed: 129, context: html, text, full: html, text
  • src/hg/hgTables/filterFields.c 1.68 - lines changed: 158, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.c 1.180 - lines changed: 1, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h 1.132 - lines changed: 30, context: html, text, full: html, text
• Making a lot more of the bigBed stuff work by implementing bigBedGetFilteredBedsOnRegions.
  • src/hg/hgTables/bedList.c 1.64 - lines changed: 5, context: html, text, full: html, text
  • src/hg/hgTables/bigBed.c 1.8 - lines changed: 51, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h 1.133 - lines changed: 5, context: html, text, full: html, text