rhead: changes by file

branch to review (2009-05-26 to 2009-06-02) v207

• src/hg/makeDb/trackDb/cgapSage.html
  • 1.21 lines changed: 3, context: html, text, full: html, text
    Removed broken link to transcriptomes.org, which has not worked for several months.
• src/hg/makeDb/trackDb/drosophila/dm2/description.html
  • 1.9 lines changed: 3, context: html, text, full: html, text
    Removed broken link to Release 3.2 heterochromatic sequence.
• src/hg/makeDb/trackDb/human/encodeEgaspFull.html
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Fixed broken Exogean link.
• src/hg/makeDb/trackDb/human/encodeEgaspUpdate.html
  • 1.8 lines changed: 1, context: html, text, full: html, text
    Fixed broken Exogean link.
• src/hg/makeDb/trackDb/human/hg16/encodeGisRnaPet.html
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Fixed broken link to Bioinformatics Institute of Singapore.
• src/hg/makeDb/trackDb/human/hg17/dukeDnaseCd4Signal.html
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Removed session ID from link to Nature Methods, which was causing an html error 404
• src/hg/makeDb/trackDb/human/hg17/dukeDnaseCd4Sites.html
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Removed session ID from link to Nature Methods, which was causing an html error 404
• src/hg/makeDb/trackDb/human/hg17/dukeDnaseHsCd4Pval.html
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Removed session ID from link to Nature Methods, which was causing an html error 404
• src/hg/makeDb/trackDb/human/hg17/dukeDnaseHsCd4Sites.html
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Removed session ID from link to Nature Methods, which was causing an html error 404
• src/hg/makeDb/trackDb/human/hg17/dukeDnaseSuper.html
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Removed session ID from link to Nature Methods, which was causing an html error 404
• src/hg/makeDb/trackDb/human/hg17/encodeGisRnaPet.html
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Fixed broken link to Bioinformatics Institute of Singapore.
• src/hg/makeDb/trackDb/human/hg17/encodeNhgriDnaseHsChipRaw.html
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Removed session ID from link to Nature Methods, which was causing an html error 404
• src/hg/makeDb/trackDb/human/hg18/encodeEgaspSuper.html
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Fixed broken Exogean link.
• src/hg/makeDb/trackDb/human/hg18/encodeGisRnaPet.html
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Fixed broken link to Bioinformatics Institute of Singapore.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaPet.html
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Fixed broken link to Bioinformatics Institute of Singapore.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisSuper.html
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Fixed broken link to Bioinformatics Institute of Singapore.
• src/hg/makeDb/trackDb/worm/ce4/description.html
  • 1.7 lines changed: 5, context: html, text, full: html, text
    Changed links to specific worm data freezes to generic wormbase links, at least temporarily.
• src/hg/makeDb/trackDb/worm/ce4/gap.html
  • 1.4 lines changed: 5, context: html, text, full: html, text
    Changed links to specific worm data freezes to generic wormbase links, at least temporarily.
• src/hg/makeDb/trackDb/worm/ce4/gold.html
  • 1.5 lines changed: 5, context: html, text, full: html, text
    Changed links to specific worm data freezes to generic wormbase links, at least temporarily.
• src/hg/makeDb/trackDb/worm/ce5/description.html
  • 1.2 lines changed: 5, context: html, text, full: html, text
    Changed links to specific worm data freezes to generic wormbase links, at least temporarily.
• src/hg/makeDb/trackDb/worm/ce5/gap.html
  • 1.2 lines changed: 5, context: html, text, full: html, text
    Changed links to specific worm data freezes to generic wormbase links, at least temporarily.
• src/hg/makeDb/trackDb/worm/ce5/gold.html
  • 1.2 lines changed: 5, context: html, text, full: html, text
    Changed links to specific worm data freezes to generic wormbase links, at least temporarily.
• src/utils/qa/doGenbankTests
  • 1.13 lines changed: 7, context: html, text, full: html, text
    Simplified getting intronEst table names even further (and logic was backwards in last commit).
  • 1.12 lines changed: 4, context: html, text, full: html, text
    Simplified some if statements.
  • 1.11 lines changed: 35, context: html, text, full: html, text
    Added special handling for intronEst in split form. Also changed a variable name.
  • 1.10 lines changed: 6, context: html, text, full: html, text
    Removed unused variable, changed date format slightly.