tdreszer: changes by file

review to branch (2009-11-17 to 2009-12-01) v220

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.145 lines changed: 55, context: html, text, full: html, text
    Added 5 more antibodies for Myers
  • 1.144 lines changed: 33, context: html, text, full: html, text
    Added BCL11A, BCL3 and BHLHE40 for Myers
• src/hg/hgTracks/hgTracks.c
  • 1.1608 lines changed: 7, context: html, text, full: html, text
    Fix bug Rachel found with imageV2 framework, where BLAT sequence track was being forced to the bottom.
• src/hg/js/hgTracks.js
  • 1.46 lines changed: 2, context: html, text, full: html, text
    Fix for bug Angie found which sets position to 1bp on hgc click
• src/hg/js/jquery.tablednd.js
  • 1.2 lines changed: 9, context: html, text, full: html, text
    Added dragStartIndex to be returned by onDrag() callback.
• src/hg/js/utils.js
  • 1.26 lines changed: 11, context: html, text, full: html, text
    Added support for calling warnBox insteadf of alert. Now a list of messages can be created, just as from C.
• src/hg/lib/hui.c
  • 1.250 lines changed: 2, context: html, text, full: html, text
    Jim requested no enforcement of view range limits
• src/hg/makeDb/doc/encodeDccHg18/broadChipSeq.notes.txt
  • 1.7 lines changed: 4, context: html, text, full: html, text
    Added a couple of tagAlign files missing from the versioned files lists
• src/hg/makeDb/doc/encodeDccHg18/uwChIPseq.release1.notes.txt
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Minor fix of a referenece to Yale which should have been HudsonAlpha
  • 1.1 lines changed: 881, context: html, text, full: html, text
    Checkin for Thomas. Notes for UwChIPseq release1, because there are too many files to be listed in the pushQ.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.429 lines changed: 2, context: html, text, full: html, text
    Fixed inconsistency in Barski settings caught by Jim
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.692 lines changed: 104, context: html, text, full: html, text
    Added 2 for Yale and Thomas corrected a DGF setting
  • 1.688 lines changed: 15, context: html, text, full: html, text
    Added missing color for Open Chromatin H1-hESC
  • 1.684 lines changed: 24, context: html, text, full: html, text
    Ann noticed missing colors on Open Chromatin tracks
  • 1.674 lines changed: 163, context: html, text, full: html, text
    Loaded several new submissions from HAIB TFSB and corrected a few settings
  • 1.673 lines changed: 3, context: html, text, full: html, text
    Minor adjustments to UW settingsByView
  • 1.669 lines changed: 321, context: html, text, full: html, text
    Check-in for Thomas. Changed UW ChIP_Seq to UW-ChIP-seq
  • 1.666 lines changed: 167, context: html, text, full: html, text
    Thomas doen not have cvs ci permission yet. He changed UW ChIP-seq to ChIP-Seq
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
  • 1.25 lines changed: 7, context: html, text, full: html, text
    Changed Stefan Graf's affiliation by Terry Furey's request
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.html
  • 1.4 lines changed: 20, context: html, text, full: html, text
    Check-in for Thomas. Added Display Conventions
• src/lib/common.c
  • 1.139 lines changed: 3, context: html, text, full: html, text
    Tiny bit more protection for findWordByDilimiter()